CuGenDBv2

Gene ID	Tan0007930
Organism	Trichosanthes anguina (Snake gourd v1)
Description	general transcription factor 3C polypeptide 6-like
Genome location	LG11:1416925..1419225
RNA-Seq Expression	Tan0007930
Synteny	Tan0007930
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022133708.1 uncharacterized protein LOC111006225 [Momordica charantia]

1.2e-51

87.79

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEAGPSETNRLIAEPVRPKR
        MEKTTI   SDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDT+NPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV  EEEAGPSET    AE V P R
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEAGPSETNRLIAEPVRPKR

Query:  -PRKELKPIASVHKILKFKLLPDSSVPNSTS
         PRKELKPIASVHKILKFKLLPDS+VPNSTS
Subjt:  -PRKELKPIASVHKILKFKLLPDSSVPNSTS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]

5.0e-47

77.61

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P
        MEK  I S SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDT+NP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEEA PSETNR   + V P + P
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P

Query:  RKELKPIASVHKILKFKLLP-----DSSVPNSTS
        R++LKP+ASVHKILKFKLL      DS+VP+STS
Subjt:  RKELKPIASVHKILKFKLLP-----DSSVPNSTS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]

3.8e-47

79.39

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRP-KRP
        MEK  I S SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDT+NP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEEA PS+TNR   + V P + P
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRP-KRP

Query:  RKELKPIASVHKILKFKLLP--DSSVPNSTS
        RK+LKP+ASVHKILKFKLL   DS+VP+STS
Subjt:  RKELKPIASVHKILKFKLLP--DSSVPNSTS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

1.3e-47

79.1

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P
        MEK  I S SDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDT+NP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEEA PSETNR   + V P + P
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P

Query:  RKELKPIASVHKILKFKLLP-----DSSVPNSTS
        RK+LKP+ASVHKILKFKLL      DS+VP+STS
Subjt:  RKELKPIASVHKILKFKLLP-----DSSVPNSTS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

1.7e-47

82.17

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P
        MEK TI S  D EEEYVLLDLGDVSLLDIPPNAPYVLSGLDT+NP+LTICDKIKM+GEYEETIGTCLTFAEEEV VVEEEA PSE+NR   E   PK+ P
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P

Query:  RKELKPIASVHKILKFKLLPDSSVPNSTS
        RKELKP+ASVHKILKFKLL DS+VPNS S
Subjt:  RKELKPIASVHKILKFKLLPDSSVPNSTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

7.3e-44

79.07

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P
        MEK TI S SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDT+NPVLTICDK KM+GEYEETIGTCLTFAEEEV VVEEEA PSET R   E V P++  
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P

Query:  RKELKPIASVHKILKFKLLPDSSVPNSTS
        +KELK +A VHKILKFKLL DS VP+S S
Subjt:  RKELKPIASVHKILKFKLLPDSSVPNSTS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

2.1e-43

78.29

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P
        MEK TI S S+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDT+NPVLTICDK KM+GEYEETIGTCLTFAEEEV VVEEEA PSETN    E   PK+  
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P

Query:  RKELKPIASVHKILKFKLLPDSSVPNSTS
        RKELK  A VHKILKFKLL DS VP+  S
Subjt:  RKELKPIASVHKILKFKLLPDSSVPNSTS

A0A6J1BZW5 uncharacterized protein LOC111006225

5.6e-52

87.79

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEAGPSETNRLIAEPVRPKR
        MEKTTI   SDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDT+NPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV  EEEAGPSET    AE V P R
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEAGPSETNRLIAEPVRPKR

Query:  -PRKELKPIASVHKILKFKLLPDSSVPNSTS
         PRKELKPIASVHKILKFKLLPDS+VPNSTS
Subjt:  -PRKELKPIASVHKILKFKLLPDSSVPNSTS

A0A6J1FF13 uncharacterized protein LOC111445121

2.4e-47

77.61

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P
        MEK  I S SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDT+NP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEEA PSETNR   + V P + P
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKR-P

Query:  RKELKPIASVHKILKFKLLP-----DSSVPNSTS
        R++LKP+ASVHKILKFKLL      DS+VP+STS
Subjt:  RKELKPIASVHKILKFKLLP-----DSSVPNSTS

A0A6J1JTZ1 uncharacterized protein LOC111489725

1.9e-47

79.39

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Query:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRP-KRP
        MEK  I S SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDT+NP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEEA PS+TNR   + V P + P
Subjt:  MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRP-KRP

Query:  RKELKPIASVHKILKFKLLP--DSSVPNSTS
        RK+LKP+ASVHKILKFKLL   DS+VP+STS
Subjt:  RKELKPIASVHKILKFKLLP--DSSVPNSTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

9.5e-20

49.07

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKRPRKELKPIASVHK
        E+E+V++DL DVS  +DIP +APY LSGLDTLNPVLTI  K+K+VGEY  TIGTCL F+++         G ++T +           +K ++P+A +HK
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKRPRKELKPIASVHK

Query:  ILKFKLLP
        ILKF+L P
Subjt:  ILKFKLLP

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

8.6e-21

51.89

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKRPRKELKPIASVHK
        EEE+V++DL +VS  ++IP +APY LSGLDTLNPVLTI  KIK+VGEY ETIGTCL F+E+E     E   P                +K ++P+A +HK
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKRPRKELKPIASVHK

Query:  ILKFKL
        ILKF+L
Subjt:  ILKFKL

Sequences

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CDS sequence

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ATGGAGAAAACTACAATTAGTTCTCCCTCTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGTGATGTATCGCTACTCGACATTCCACCCAATGCTCCATATGTTCT
ATCTGGTTTGGACACCCTGAATCCAGTGTTGACTATATGTGATAAAATTAAAATGGTTGGAGAATATGAGGAAACAATAGGCACATGTCTTACCTTCGCGGAAGAGGAAG
TCTCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACTAATCGTCTCATTGCTGAACCAGTTCGACCAAAACGTCCAAGGAAGGAGTTGAAACCCATTGCTTCAGTACAT
AAGATCCTTAAATTTAAGTTGTTGCCTGATTCTTCTGTTCCAAACTCAACATCTTAG

mRNA sequence

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Protein sequence

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MEKTTISSPSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTLNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEAGPSETNRLIAEPVRPKRPRKELKPIASVH
KILKFKLLPDSSVPNSTS

Tan0007930 (gene) of Snake gourd v1 genome