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Tan0007945 (gene) of Snake gourd v1 genome

Gene IDTan0007945
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG10:8867352..8868174
RNA-Seq ExpressionTan0007945
SyntenyTan0007945
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9446591.1 hypothetical protein C3L33_21514, partial [Rhododendron williamsianum]1.5e-1141.18Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLD--SCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWL
        EE++E   + +LT EEE+   D+  D+ V     +D  + LVGKL+  R  S   +++T +  W    GL +  +G+NLF FRF NEMD  RV +GGPW 
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLD--SCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWL

Query:  FD
        FD
Subjt:  FD

KAE9462112.1 hypothetical protein C3L33_05982, partial [Rhododendron williamsianum]1.9e-1141.18Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLD--SCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWL
        EE++E     +LT EEE+   D+  D+ +     +D  + LVGKL+  R  S   +++T +  W +  GL V  +G NLF FRF NEMD  RV +GGPW 
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLD--SCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWL

Query:  FD
        FD
Subjt:  FD

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.5e-1648.51Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        E L+ DW K  LT+EE+E ++DV  D+    E+ L   LVGKL+  R ISA+V+      AWK+E  L VE IGKNLF F F  E D  RV   GPW FD
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

Query:  R
        +
Subjt:  R

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.4e-1644.12Show/hide
Query:  ELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIE-SGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        +L+E+W    LT+EEEET++DV   +      RL+  LVGKL   R I+  VM+NT + AWK+E +  EV+ +G NLF F F   +D  ++   GPW FD
Subjt:  ELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIE-SGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

Query:  RT
        RT
Subjt:  RT

XP_030949473.1 uncharacterized protein LOC115973353 [Quercus lobata]7.3e-1134.88Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSC---LVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPW
        EE+I     + LTTEEEE    V   SE   +E ++SC   L+GK++  +  + +  +NT + AW +   L++  +G NLF F+FR+E +  RV  GGPW
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSC---LVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPW

Query:  LFDR--TPFQGLQPFLQELDPRCEISPIW
         FD      +  QP +   + + E  P+W
Subjt:  LFDR--TPFQGLQPFLQELDPRCEISPIW

TrEMBL top hitse value%identityAlignment
A0A2N9FJK9 CCHC-type domain-containing protein4.2e-1237Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        +EL+EDW + +L TE+E     +  ++  + E     CL+GKL+  ++ +   ++ T    W   SG+  + +G+NLF F+F+N+ DC RV HG PWLFD
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

A0A2N9GF83 CCHC-type domain-containing protein7.1e-1234.15Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        EEL+EDW + +L TE+E     +  ++  N +     CL+GKL+  +  +   ++ T    W +  G+  + +G NLF F+F+NE DC RV  G PWLFD
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

Query:  RTPFQGLQPFLQELDPRCEISPI
                  L E D  C  + I
Subjt:  RTPFQGLQPFLQELDPRCEISPI

A0A2N9IPS8 Reverse transcriptase domain-containing protein3.2e-1237.4Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        EEL+E+W K +L TE+E     +  D+  N       CL+GKLI  RY + E ++N     W +  G+ V+ +G NLF F+F+N  +  RV  G PWLFD
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

Query:  RTPFQGLQPFLQELDPRCEISPI
                  L E D  C  S I
Subjt:  RTPFQGLQPFLQELDPRCEISPI

A0A6J1DU55 uncharacterized protein LOC1110231357.3e-1748.51Show/hide
Query:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        E L+ DW K  LT+EE+E ++DV  D+    E+ L   LVGKL+  R ISA+V+      AWK+E  L VE IGKNLF F F  E D  RV   GPW FD
Subjt:  EELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

Query:  R
        +
Subjt:  R

A0A6J1DX30 uncharacterized protein LOC1110248741.6e-1644.12Show/hide
Query:  ELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIE-SGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
        +L+E+W    LT+EEEET++DV   +      RL+  LVGKL   R I+  VM+NT + AWK+E +  EV+ +G NLF F F   +D  ++   GPW FD
Subjt:  ELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIE-SGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD

Query:  RT
        RT
Subjt:  RT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCTTCAAGCCAATCAAAGGGGCAAGAGGAACTGATCGAGGACTGGAGCAAACTTAATCTAACAACAGAGGAAGAAGAGACTTCAGTCGATGTGAAGTTTGATTC
GGAGGTGAATGTGGAAGAGAGGCTGGATAGTTGCCTTGTGGGAAAACTGATCTGCGGAAGATATATTTCGGCAGAGGTTATGCGGAATACCTTCAAGGCAGCATGGAAGA
TCGAATCGGGACTAGAGGTCGAGGGTATTGGCAAGAATTTGTTCTTCTTTCGATTCCGTAATGAGATGGATTGTCTGAGAGTGACTCACGGGGGACCATGGCTATTCGAC
AGGACACCATTTCAAGGACTGCAACCATTTTTACAAGAACTCGACCCAAGGTGTGAAATTTCACCAATATGGACAGTACCTGAGATTCGTGAACCGACCCCCAGCGATAG
CCCGATCCCCTGTTTGAGACGAACCAAGGAAGCATCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCTTCAAGCCAATCAAAGGGGCAAGAGGAACTGATCGAGGACTGGAGCAAACTTAATCTAACAACAGAGGAAGAAGAGACTTCAGTCGATGTGAAGTTTGATTC
GGAGGTGAATGTGGAAGAGAGGCTGGATAGTTGCCTTGTGGGAAAACTGATCTGCGGAAGATATATTTCGGCAGAGGTTATGCGGAATACCTTCAAGGCAGCATGGAAGA
TCGAATCGGGACTAGAGGTCGAGGGTATTGGCAAGAATTTGTTCTTCTTTCGATTCCGTAATGAGATGGATTGTCTGAGAGTGACTCACGGGGGACCATGGCTATTCGAC
AGGACACCATTTCAAGGACTGCAACCATTTTTACAAGAACTCGACCCAAGGTGTGAAATTTCACCAATATGGACAGTACCTGAGATTCGTGAACCGACCCCCAGCGATAG
CCCGATCCCCTGTTTGAGACGAACCAAGGAAGCATCAGTCTAG
Protein sequenceShow/hide protein sequence
MGSSSQSKGQEELIEDWSKLNLTTEEEETSVDVKFDSEVNVEERLDSCLVGKLICGRYISAEVMRNTFKAAWKIESGLEVEGIGKNLFFFRFRNEMDCLRVTHGGPWLFD
RTPFQGLQPFLQELDPRCEISPIWTVPEIREPTPSDSPIPCLRRTKEASV