; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0007982 (gene) of Snake gourd v1 genome

Gene IDTan0007982
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG08:25476654..25477010
RNA-Seq ExpressionTan0007982
SyntenyTan0007982
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-1651.58Show/hide
Query:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        S GSKRK  +   EMV V+  A       LK I +WPKEKRATEVE+R+++V  L  IP+L S+ +A++M ILFR V+A E FLS+  +L+LEYC
Subjt:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.5e-1651.58Show/hide
Query:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        S GSKRK  +   E V V++ A+      LK IA WPKEKRATEVE+R++++  L  IPEL SR +A+++ ILFR V+A E FLS+  E +LEYC
Subjt:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-1653.68Show/hide
Query:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        S GSKRK  +   E V V+R AM      LK IA WPKEKR TEVE+R+++V  L  I EL SR +A++M ILF  V+A E FLS+  EL+LEYC
Subjt:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]9.4e-1652.17Show/hide
Query:  SKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        SKRK  + + E V V+R  M      LK IA+WPKEKRA EVE+R+Q+V  L  IP+L S+ +A++M ILFR ++A E FLS+  EL+LEYC
Subjt:  SKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]1.3e-1747.01Show/hide
Query:  DTPHDEMHETPTSRNNTVGASTSRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQ
        D   DE H TPT      G ++ RGSKRK   Y SE+V V ++AM+     LK IAEW K++ ATEVE+R+++V+ L  IP+L ++ K + MNI+FR+V 
Subjt:  DTPHDEMHETPTSRNNTVGASTSRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQ

Query:  ASESFLSVSPELQLEYC
         +ESFLS+  +++LEYC
Subjt:  ASESFLSVSPELQLEYC

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859534.6e-1652.17Show/hide
Query:  SKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        SKRK  + + E V V+R  M      LK IA+WPKEKRA EVE+R+Q+V  L  IP+L S+ +A++M ILFR ++A E FLS+  EL+LEYC
Subjt:  SKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

A0A5A7SQU2 Putative nuclease HARBI11.2e-1651.58Show/hide
Query:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        S GSKRK  +   E V V++ A+      LK IA WPKEKRATEVE+R++++  L  IPEL SR +A+++ ILFR V+A E FLS+  E +LEYC
Subjt:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

A0A5A7U0H7 Retrotransposon protein4.6e-1652.17Show/hide
Query:  SKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        SKRK  + + E V V+R  M      LK IA+WPKEKRA EVE+R+Q+V  L  IP+L S+ +A++M ILFR ++A E FLS+  EL+LEYC
Subjt:  SKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

A0A5D3BZU3 Retrotransposon protein1.6e-1651.58Show/hide
Query:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        S GSKRK  +   EMV V+  A       LK I +WPKEKRATEVE+R+++V  L  IP+L S+ +A++M ILFR V+A E FLS+  +L+LEYC
Subjt:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

A0A5D3CT52 Retrotransposon protein1.2e-1653.68Show/hide
Query:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC
        S GSKRK  +   E V V+R AM      LK IA WPKEKR TEVE+R+++V  L  I EL SR +A++M ILF  V+A E FLS+  EL+LEYC
Subjt:  SRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVSPELQLEYC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACAGTTGGTGCTTCTACATCCAGAGGTAGTAAAAGAAAGCTCTCCACTTATCAATCTGA
GATGGTTGCTGTGGTACGAGATGCTATGAATGTGAATGCATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCGTGCGACGGAGGTAGAAGTACGATCACAAA
TTGTGGACCACCTGTATAGGATCCCAGAGTTGGATAGTCGGGCTAAAGCACAAGTGATGAACATCCTCTTCCGTGATGTCCAAGCATCAGAAAGTTTCTTATCTGTGTCT
CCAGAGTTGCAGCTGGAATATTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACAGTTGGTGCTTCTACATCCAGAGGTAGTAAAAGAAAGCTCTCCACTTATCAATCTGA
GATGGTTGCTGTGGTACGAGATGCTATGAATGTGAATGCATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCGTGCGACGGAGGTAGAAGTACGATCACAAA
TTGTGGACCACCTGTATAGGATCCCAGAGTTGGATAGTCGGGCTAAAGCACAAGTGATGAACATCCTCTTCCGTGATGTCCAAGCATCAGAAAGTTTCTTATCTGTGTCT
CCAGAGTTGCAGCTGGAATATTGTTAG
Protein sequenceShow/hide protein sequence
MDTPHDEMHETPTSRNNTVGASTSRGSKRKLSTYQSEMVAVVRDAMNVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKAQVMNILFRDVQASESFLSVS
PELQLEYC