; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008001 (gene) of Snake gourd v1 genome

Gene IDTan0008001
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCold-inducible RNA binding protein
Genome locationLG01:34644706..34645620
RNA-Seq ExpressionTan0008001
SyntenyTan0008001
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0017069 - snRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607208.1 Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia]9.8e-4092.63Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKT  HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

XP_008457543.1 PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]3.4e-4091.49Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATS
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD TS
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATS

XP_022949004.1 cold-inducible RNA-binding protein B-like [Cucurbita moschata]2.0e-4093.68Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

XP_023523197.1 cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo]1.3e-3993.68Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR
        MANRLG+QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQS  EAKKAL AMNGRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

XP_038895198.1 small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]5.6e-4397.89Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR
        MANR+GSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

TrEMBL top hitse value%identityAlignment
A0A0A0KQ26 Cold-inducible RNA binding protein7.9e-3589.41Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKT
        MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARLIRDPKT+RPKGFGFVTFQSP EAKKAL+AM+GRIVDGRLIFVEFAKT
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKT

A0A1S3C5W5 cold-inducible RNA-binding protein B1.6e-4091.49Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATS
        MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD TS
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATS

A0A6J1DM71 small RNA-binding protein 11, chloroplastic6.7e-3484.44Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGV
        MAN +GSQ+FISRLSSYTTIERL+SLFS FG+VSEARL+RDPKT RPKGFGFVTFQSPVEA+KA++AMNGRIVDGRLIFVEFA TR  GV
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGV

A0A6J1GBJ9 cold-inducible RNA-binding protein B-like9.6e-4193.68Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

A0A6J1KF23 cold-inducible RNA-binding protein B-like9.6e-4193.68Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR
        MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

SwissProt top hitse value%identityAlignment
P60826 Cold-inducible RNA-binding protein4.8e-1348.68Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++  +AK A+ AMNG+ VDGR I V+ A
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q14011 Cold-inducible RNA-binding protein4.8e-1348.68Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++  +AK A+ AMNG+ VDGR I V+ A
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q28IQ9 Cold-inducible RNA-binding protein7.4e-1448.68Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        +LF+  L+  TT E LE +FS +G V+E  +++D +++R +GFGFVTF++P +AK A+ AMNG+ VDGR I V+ A
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q9DED4 Cold-inducible RNA-binding protein B5.7e-1450Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        +LFI  L+  T  E LE +FS +G +SE  +++D +T+R +GFGFVTF++P +AK A+ AMNG+ VDGR I V+ A
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q9FFZ6 Small RNA-binding protein 11, chloroplastic1.6e-1348.19Show/hide
Query:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR
        + S+LFI  LS  TT + L   FS  G V EA+++ D  + R KGFGFVTF S  EA+KAL   NG+ ++GR IFV++AK ++
Subjt:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-1443.75Show/hide
Query:  SQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR
        ++L++S LS  TT + L   F  FG++    ++ D    RPKGF F+ +++  EA KA+Q M+G+ +DGR+IFVE AKTR
Subjt:  SQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-1345.57Show/hide
Query:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR
        +LF+S LS  TT E+L+  F+ FG + +AR+I D  + R KGFGFVT+ +  +A+KA   MN + +DG +IFV+ A+ R
Subjt:  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-2766.67Show/hide
Query:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK
        MA R+ +QLF+SRLS+YTT + L  LFSPFG + EARLIRD +TQRPKGFGF+TF S  +A+KAL++++G+IVDGRLIFVE AK
Subjt:  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein1.2e-1448.19Show/hide
Query:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR
        + S+LFI  LS  TT + L   FS  G V EA+++ D  + R KGFGFVTF S  EA+KAL   NG+ ++GR IFV++AK ++
Subjt:  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.8e-1963.01Show/hide
Query:  SRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK
        S LS+YTT + L  LF+PF     ARLI+D +TQRPKGFGF+TF+S  +A+KAL+A+NG+IV+GRLIFVE AK
Subjt:  SRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACCGACTCGGCTCGCAGCTTTTCATCAGCAGACTGTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCG
GCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCGCCGGTTGAGGCGAAGAAGGCTCTTCAAGCCATGAATGGCCGGATAGTTG
ATGGAAGGTTGATTTTTGTTGAATTTGCAAAGACGAGGAGACATGGGGTAGATGCTACATCTAGATAA
mRNA sequenceShow/hide mRNA sequence
CATAAATAAAGGCAAACTTTCAAAAATTACGGGCTAAACTTCTTGTAATTTAACATCTTTTTATTGGTTTAGATACAGAAGGTCCTCGCGTTTGGGAAGGAATGGCTAAC
CGACTCGGCTCGCAGCTTTTCATCAGCAGACTGTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAATCAG
AGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCGCCGGTTGAGGCGAAGAAGGCTCTTCAAGCCATGAATGGCCGGATAGTTGATGGAAGGT
TGATTTTTGTTGAATTTGCAAAGACGAGGAGACATGGGGTAGATGCTACATCTAGATAAAGATCATCATTCAAGACGAGACATGGAGATTTGTGCATGCTTTTGGAGTTT
AATCCGTCTGT
Protein sequenceShow/hide protein sequence
MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR