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Tan0008008 (gene) of Snake gourd v1 genome

Gene IDTan0008008
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationLG08:72290230..72290804
RNA-Seq ExpressionTan0008008
SyntenyTan0008008
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]1.5e-4587.6Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGY-VRANNSRARTPFTVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS +L SSL PARA TCN QD R CLFQIGY VRAN+SRART F +Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELI
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGY-VRANNSRARTPFTVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKGILQVIGVDVGKGLDLPL
        LNKGILQVIGVDVGKGLDLPL
Subjt:  LNKGILQVIGVDVGKGLDLPL

XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]2.4e-5191.6Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASSS MLSSSLLPARAPT NRQDGRLCLFQIG VRANNSRAR PF VQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVDVGKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]3.1e-5189.92Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+T+LSSSLLPARAP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-5089.08Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+T+LSSSLLPA AP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]2.2e-5291.6Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASSS +LSSSLLPARAP C++QDGRLCLFQIG VRANNSR+R PF VQAAKPPAGVELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIGIFVVELILN
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVDVGKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein7.3e-4687.6Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGY-VRANNSRARTPFTVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS +L SSL PARA TCN QD R CLFQIGY VRAN+SRART F +Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELI
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGY-VRANNSRARTPFTVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKGILQVIGVDVGKGLDLPL
        LNKGILQVIGVDVGKGLDLPL
Subjt:  LNKGILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein4.9e-4285.95Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIG-YVRANNSRARTPFTVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS +L SSL PARA T N+QDGR  LFQIG  VRANNSRAR  F VQ AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIG-YVRANNSRARTPFTVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKGILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKGILQVIGVDVGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic1.2e-5191.6Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASSS MLSSSLLPARAPT NRQDGRLCLFQIG VRANNSRAR PF VQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVDVGKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic1.5e-5189.92Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+T+LSSSLLPARAP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic1.5e-5189.92Show/hide
Query:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+T+LSSSLLPARAP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic1.2e-2657.14Show/hide
Query:  SSTMLSSSL---LPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        SS+ LSSSL   L   +  C+ +   LC           +R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILN
Subjt:  SSTMLSSSL---LPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGIL++IGV++GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein8.8e-2857.14Show/hide
Query:  SSTMLSSSL---LPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        SS+ LSSSL   L   +  C+ +   LC           +R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILN
Subjt:  SSTMLSSSL---LPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGIL++IGV++GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCTGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTATGTCCGCGC
CAATAACAGCAGGGCTCGTACCCCTTTTACGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAATTCAAGAGCCTGCATGATAGGCCTCATTGGGATTTTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGAT
GTTGGGAAAGGCCTGGATCTTCCTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCTGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTATGTCCGCGC
CAATAACAGCAGGGCTCGTACCCCTTTTACGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAATTCAAGAGCCTGCATGATAGGCCTCATTGGGATTTTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGAT
GTTGGGAAAGGCCTGGATCTTCCTCTATGA
Protein sequenceShow/hide protein sequence
MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVD
VGKGLDLPL