; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008014 (gene) of Snake gourd v1 genome

Gene IDTan0008014
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationLG10:23273588..23282661
RNA-Seq ExpressionTan0008014
SyntenyTan0008014
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR029401 - Nudix hydrolase, N-terminal
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]3.8e-5996.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-5996.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]1.7e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCRQNWRED
Subjt:  NENCRQNWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]3.8e-5996.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]6.5e-5996.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCR NWRED
Subjt:  NENCRQNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit8.3e-6097.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCRQNWRED
Subjt:  NENCRQNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit8.3e-6097.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCRQNWRED
Subjt:  NENCRQNWRED

A0A6J1DDT5 DNA-directed RNA polymerase subunit8.6e-5791.89Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYV +LENR+KIKRKQHL+KKELEPIISDDDMK AAQTEATCPNC FGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NENCR NWRED
Subjt:  NENCRQNWRED

A0A6J1EXG3 DNA-directed RNA polymerase subunit1.8e-5996.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit1.8e-5996.4Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK+SRFFCPTCPYVSYLENR+KIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
        NE+CRQNWRED
Subjt:  NENCRQNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC102.1e-1537.72Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPATTFY
        M+FCPTCGN L   +   G+ + F C TCPY  +      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRQNWRED
        +C    C+  WRE+
Subjt:  KCMNENCRQNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC107.1e-1640.35Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPATTFY
        + FCP+C NML     + G      C +CPY   +E  I+I  ++ L +KE++ ++      N  QT+  CPN   CG   A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRQNWRED
        KC+  NC   W+E+
Subjt:  KCMNENCRQNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC102.1e-1539.81Show/hide
Query:  FCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV  +  ++   RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNE

Query:  NCRQNWRE
         C   WR+
Subjt:  NCRQNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC102.4e-1640.37Show/hide
Query:  FCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +    K+  +++   KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRQNWRE
          C   WR+
Subjt:  ENCRQNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC101.4e-1640.37Show/hide
Query:  FCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +    K+  +++   KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRQNWRE
          C   WR+
Subjt:  ENCRQNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal6.5e-3354.05Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G  SRFFC TCPYV+Y++ +++IK+KQ LVKK +E +++ DD+  AA+TEA CP CG  KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
           C   WRE+
Subjt:  NENCRQNWRED

AT2G38560.1 transcript elongation factor IIS7.5e-0541.3Show/hide
Query:  AAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWR
        A+  +  C  CG  K  + Q+Q RSADEP TT+  C+  NC  +W+
Subjt:  AAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal1.0e-3355.86Show/hide
Query:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV+ +E R++IK+KQ LVKK +EP+++ DD+  AA+TEA CP CG  KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRQNWRED
           C   WRE+
Subjt:  NENCRQNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGCCCAACTTGTGGGAACATGCTACAATTTGAGTTGCCCAATATGGGTAAAACTTCTAGATTCTTTTGCCCGACTTGTCCATATGTGTCTTACTTGGAGAA
TAGGATAAAGATCAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATT
GTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGCAGACAAAATTGGCGTGAG
GATTAA
mRNA sequenceShow/hide mRNA sequence
TTCCCCCTCAATTTAAACCAAGTTCTTTTCTTCCCTCGCCCAAGCTGGTATTGCTACTACTAACCCCCAGTTCCCGATTCCCTCATCGGATCCAATTCACTTGCACGCCA
CAACGGACGAACGCGTCTCTCGTTCTCACTTCTCAGATTAGGCGCTTCCTTGCTTTCTACCCTTGCCGATTTTCACACACTCTGTCCTTGCTAATGGAGTTTTGCCCAAC
TTGTGGGAACATGCTACAATTTGAGTTGCCCAATATGGGTAAAACTTCTAGATTCTTTTGCCCGACTTGTCCATATGTGTCTTACTTGGAGAATAGGATAAAGATCAAAA
GAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCT
GCTTTTATACAAATACAACTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGCAGACAAAATTGGCGTGAGGATTAAGTGTCATGAAG
ATGCGTTTGTGAGGTCATAAGCTTTTCTTTACTGATTTTTTCGCTATATATTTTTTCTAACCAATGTAAAACTTATTTCTATTAATAAAATATTTCTTACATGAATAGCA
TTATGAATTATGAATGTTGTT
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPNMGKTSRFFCPTCPYVSYLENRIKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE
D