; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008020 (gene) of Snake gourd v1 genome

Gene IDTan0008020
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG10:46715130..46732300
RNA-Seq ExpressionTan0008020
SyntenyTan0008020
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0644.58Show/hide
Query:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG
        VEIELP+ D LP S   +     TWLELY +S+     C++  Q   G H++L        R ++VCWLHAVF+AK AG  GG
Subjt:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.3e-1248.96Show/hide
Query:  MTKTLSSRLYGTVCTQVEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHV----------LLRDNNVCWLHAVFQAKLA
        MT+ LS RLYGTVCTQV+IELPM D LP S       F TWLELY +S+     C++  QV  G H+          ++R ++VCWLHAVF+ K A
Subjt:  MTKTLSSRLYGTVCTQVEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHV----------LLRDNNVCWLHAVFQAKLA

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0842.72Show/hide
Query:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC
        MT+ LS RLYGTVCTQ                 VEIELP+ D LP S         TWLELY + +   ++ +      ++R+++VCWLHAVF+AK AG 
Subjt:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC

Query:  SGG
         GG
Subjt:  SGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0644.58Show/hide
Query:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG
        VEIELP+ D LP S   +     TWLELY +S+     C++  Q   G H++L        R ++VCWLHAVF+AK AG  GG
Subjt:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0842.72Show/hide
Query:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC
        MT+ LS RLYGTVCTQ                 VEIELP+ D LP S         TWLELY + +   ++ +      ++R+++VCWLHAVF+AK AG 
Subjt:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC

Query:  SGG
         GG
Subjt:  SGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase7.7e-0744.58Show/hide
Query:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG
        VEIELP+ D LP S   +     TWLELY +S+     C++  Q   G H++L        R ++VCWLHAVF+AK AG  GG
Subjt:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG

A0A5A7V638 Uncharacterized protein1.6e-1248.96Show/hide
Query:  MTKTLSSRLYGTVCTQVEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHV----------LLRDNNVCWLHAVFQAKLA
        MT+ LS RLYGTVCTQV+IELPM D LP S       F TWLELY +S+     C++  QV  G H+          ++R ++VCWLHAVF+ K A
Subjt:  MTKTLSSRLYGTVCTQVEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHV----------LLRDNNVCWLHAVFQAKLA

A0A5A7VMG9 Reverse transcriptase1.4e-0842.72Show/hide
Query:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC
        MT+ LS RLYGTVCTQ                 VEIELP+ D LP S         TWLELY + +   ++ +      ++R+++VCWLHAVF+AK AG 
Subjt:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC

Query:  SGG
         GG
Subjt:  SGG

A0A5D3D150 Reverse transcriptase7.7e-0744.58Show/hide
Query:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG
        VEIELP+ D LP S   +     TWLELY +S+     C++  Q   G H++L        R ++VCWLHAVF+AK AG  GG
Subjt:  VEIELPMHDNLPYSISLI---FCTWLELYRKSI-----CFYVYQVKKGQHVLL--------RDNNVCWLHAVFQAKLAGCSGG

A0A5D3DX39 Reverse transcriptase1.4e-0842.72Show/hide
Query:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC
        MT+ LS RLYGTVCTQ                 VEIELP+ D LP S         TWLELY + +   ++ +      ++R+++VCWLHAVF+AK AG 
Subjt:  MTKTLSSRLYGTVCTQ-----------------VEIELPMHDNLPYSISLI---FCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGC

Query:  SGG
         GG
Subjt:  SGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGACATTGAGCTCGAGACTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCATGATAACCTGCCATACTCAATAAGTTTGATATTTTGTAC
TTGGCTAGAGTTGTATAGAAAGTCCATATGTTTTTATGTTTATCAGGTAAAGAAGGGTCAACATGTATTGTTAAGAGATAACAATGTTTGTTGGCTTCATGCCGTCTTTC
AGGCTAAGTTAGCAGGTTGTTCGGGAGGGGTTATTGAGTTAGTTCAGATTGAACTAGTAGAGTATGGTCCAAGTAACGATAAGAGTAAGTCCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGACATTGAGCTCGAGACTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCATGATAACCTGCCATACTCAATAAGTTTGATATTTTGTAC
TTGGCTAGAGTTGTATAGAAAGTCCATATGTTTTTATGTTTATCAGGTAAAGAAGGGTCAACATGTATTGTTAAGAGATAACAATGTTTGTTGGCTTCATGCCGTCTTTC
AGGCTAAGTTAGCAGGTTGTTCGGGAGGGGTTATTGAGTTAGTTCAGATTGAACTAGTAGAGTATGGTCCAAGTAACGATAAGAGTAAGTCCAGTTAG
Protein sequenceShow/hide protein sequence
MTKTLSSRLYGTVCTQVEIELPMHDNLPYSISLIFCTWLELYRKSICFYVYQVKKGQHVLLRDNNVCWLHAVFQAKLAGCSGGVIELVQIELVEYGPSNDKSKSS