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Tan0008071 (gene) of Snake gourd v1 genome

Gene IDTan0008071
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUbiquitin family protein
Genome locationLG01:17824176..17824421
RNA-Seq ExpressionTan0008071
SyntenyTan0008071
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0000151 - ubiquitin ligase complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4128432.1 Ubiquitin family [Phytophthora infestans]3.6e-1458.75Show/hide
Query:  MQMQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQMQIFVKT+   G+ I +DV P+D+I +VKSKI+ K+G+  D Q+LI AGK LED RTL+D  IQ +S LHL  R+RGG
Subjt:  MQMQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

XP_005550006.1 PREDICTED: ubiquitin-like [Macaca fascicularis]4.6e-1456.41Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+   G+ I ++V P+DT  +VK+KI+AK+G+  D Q+LI AGK LED RTL+DC IQ +S LHLG  ++GG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

XP_024646596.1 ubiquitin-60S ribosomal protein L40-like isoform X2 [Macaca nemestrina]4.6e-1456.41Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+   G+ I ++V P+DT  +VK+KI+AK+G+  D Q+LI AGK LED RTL+DC IQ +S LHLG  ++GG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

XP_025235273.1 ubiquitin-60S ribosomal protein L40-like isoform X2 [Theropithecus gelada]4.2e-1558.97Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+A  G+ I ++V P+DT  +VK+KI+AK+G+  D Q+LI AGK LED RTL+DC IQ +S LHLG R++GG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

XP_032745028.1 ubiquitin-40S ribosomal protein S27a-like [Rattus rattus]2.7e-1457.14Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRG
        MQIFVKT+   G+ I ++V P+DTI ++K+KI+ K+G+  D Q+LI AGK LED RTL+DC IQ +S LHLG R+RG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRG

TrEMBL top hitse value%identityAlignment
A0A096MT73 60S ribosomal protein L407.7e-1557.69Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+A  G+ I ++V P+DT  +VK+KI+AK+G+  D Q+LI AGK LED RTL+DC IQ +S LHLG  ++GG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

A0A0A0L314 Ubiquitin-like domain-containing protein1.3e-1456.79Show/hide
Query:  MQMQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQMQIFVKT   DG+ + +D+ PT TI  +K+K+EAK GVRADSQ ++ AGK+LE+ +TLA+  I+ DSAL+L  R+ GGF
Subjt:  MQMQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

A0A2K6ATK3 60S ribosomal protein L402.2e-1456.41Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+   G+ I ++V P+DT  +VK+KI+AK+G+  D Q+LI AGK LED RTL+DC IQ +S LHLG  ++GG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

A0A2P9GMQ7 Polyubiquitin2.9e-1458.23Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I +DV P+DTI +VK+KI+ K+G+  D Q+LI AGK LED RTL+D  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

A0A6C0HA42 Ubiquitin-like domain-containing protein5.9e-1558.97Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+   G+ I ++V PTDTI +VK+KI+AK+G+ +D Q+LI AGK LED RTLAD  +Q +S LHL  R+RGG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

SwissProt top hitse value%identityAlignment
P0CG49 Polyubiquitin-B5.1e-1655.7Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V P+DTI +VK+KI+ K+G+  D Q+LI AGK LED RTL+D  IQ +S LHL  R+RGG+
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

P0CG62 Polyubiquitin-B5.1e-1655.7Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V P+DTI +VK+KI+ K+G+  D Q+LI AGK LED RTL+D  IQ +S LHL  R+RGG+
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

P0CG68 Polyubiquitin-C2.3e-1656.96Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V P+DTI +VK+KI+ K+G+  D Q+LI AGK LED RTL+D  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

P23324 Polyubiquitin3.9e-1658.23Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I +DV  +DTI +VK+KI+ K+G+  D Q+LI AGK LED RTLAD  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

P46575 Ubiquitin-60S ribosomal protein L403.9e-1657.69Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG
        MQIFVKT+   G+ I +DV P+DTI +VK+KI+ K+G+  D Q+LI AGK LED RTL+D  IQ +S LHL  R+RGG
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGG

Arabidopsis top hitse value%identityAlignment
AT4G02890.1 Ubiquitin family protein8.1e-1756.96Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V  +DTI +VK+KI+ K+G+  D Q+LI AGK LED RTLAD  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

AT4G05050.1 ubiquitin 118.1e-1756.96Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V  +DTI +VK+KI+ K+G+  D Q+LI AGK LED RTLAD  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

AT4G05320.2 polyubiquitin 108.1e-1756.96Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V  +DTI +VK+KI+ K+G+  D Q+LI AGK LED RTLAD  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

AT4G05320.3 polyubiquitin 108.1e-1756.96Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V  +DTI +VK+KI+ K+G+  D Q+LI AGK LED RTLAD  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF

AT4G05320.4 polyubiquitin 108.1e-1756.96Show/hide
Query:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF
        MQIFVKT+   G+ I ++V  +DTI +VK+KI+ K+G+  D Q+LI AGK LED RTLAD  IQ +S LHL  R+RGGF
Subjt:  MQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATGCAGATTTTTGTGAAAACTGTAGCTGGTGACGGGAGAAATATTTGTGTAGATGTTTTGCCTACGGACACGATTGCCGATGTGAAGTCTAAAATCGAAGCCAA
GAAAGGCGTACGTGCTGATTCACAGAAGCTGATTTGTGCAGGAAAGATTCTTGAAGATGATCGAACTCTTGCAGATTGTAAGATCCAGGGAGATTCTGCATTGCATTTGG
GTTTTCGTGTTCGCGGCGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATGCAGATTTTTGTGAAAACTGTAGCTGGTGACGGGAGAAATATTTGTGTAGATGTTTTGCCTACGGACACGATTGCCGATGTGAAGTCTAAAATCGAAGCCAA
GAAAGGCGTACGTGCTGATTCACAGAAGCTGATTTGTGCAGGAAAGATTCTTGAAGATGATCGAACTCTTGCAGATTGTAAGATCCAGGGAGATTCTGCATTGCATTTGG
GTTTTCGTGTTCGCGGCGGCTTTTAA
Protein sequenceShow/hide protein sequence
MQMQIFVKTVAGDGRNICVDVLPTDTIADVKSKIEAKKGVRADSQKLICAGKILEDDRTLADCKIQGDSALHLGFRVRGGF