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Tan0008136 (gene) of Snake gourd v1 genome

Gene IDTan0008136
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG05:60918198..60918602
RNA-Seq ExpressionTan0008136
SyntenyTan0008136
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.3e-2447.73Show/hide
Query:  MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQN
        M + R+ D+ P D EIERT R  LR  K       D+E++  P+ +++Y +PV N   + I+  PINANNFELK  LI MV++  F G   +DPN HL  
Subjt:  MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQN

Query:  FLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        FLEIC T K+NG++ D IRLRLFPF L+ +A+
Subjt:  FLEICGTFKMNGISADNIRLRLFPFFLQGRAK

PKA48167.1 hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica]5.3e-2344.22Show/hide
Query:  MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-
        M +    DL PFD EIERT  ++ R+ K +                M DQ  I    + +REY  P  N   T +V   + ANNFE+K  LIQM+++   
Subjt:  MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-

Query:  FRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        F GL ++DPN+H+ NFLEIC TFK NG+S D IRLRLFPF L+ +AK
Subjt:  FRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]5.8e-3056.82Show/hide
Query:  MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQN
        MP+   T+L P D EI+RT RR LR    +T  M ++     PK IR+YFQP   + Q  I+N PIN NNFELK  LIQM R+ AFRG   EDP+ HL++
Subjt:  MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQN

Query:  FLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        FLEICGT KMNG+S D I+LRLFPF LQ RAK
Subjt:  FLEICGTFKMNGISADNIRLRLFPFFLQGRAK

XP_017405956.1 PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis]1.5e-2248.91Show/hide
Query:  FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPN
        FD EIERT        RR  RE +          ET TM DQE +   K +R+Y  P  NS Q  IV  PI ANNFE+K  L+Q++++  F G  +EDPN
Subjt:  FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPN

Query:  SHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        SHL+NFL IC T K+N +S D IRLRLFPF L+ +AK
Subjt:  SHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

XP_017428686.1 PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis]1.3e-2450Show/hide
Query:  FDLEIERTCR-----------------RLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDP
        FD EIERT R                 RL+ +GK ET TM DQE +   K +R+Y  P  NS Q  IV  PI ANNFE+K  L+Q++++  F G  +EDP
Subjt:  FDLEIERTCR-----------------RLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDP

Query:  NSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        NSHL+NFL IC T K NG+S D IRLRLFPF L+ +AK
Subjt:  NSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

TrEMBL top hitse value%identityAlignment
A0A1S3UKD4 uncharacterized protein LOC1067662675.4e-2146.72Show/hide
Query:  FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPN
        FD  IERT        RR  RE +          ET TM +++  N  K IR+Y  P  N  Q  IV  PI ANNFE+K  L+Q++++  F G  +EDPN
Subjt:  FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPN

Query:  SHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        SHL+NFL IC T K NG+S D I LRLFPF L+ +AK
Subjt:  SHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

A0A1U8Q202 uncharacterized protein LOC1091142081.4e-2148.41Show/hide
Query:  PFDLEIERT-CRRL--LREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEICG
        P+D EIERT C RL   R+ + ET  M +      P+ + +Y +P        IV   I+ANNFE+K  +IQM++    F G+A EDPNSH+ NFLEIC 
Subjt:  PFDLEIERT-CRRL--LREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEICG

Query:  TFKMNGISADNIRLRLFPFFLQGRAK
        TFK NG+S D +RLRLFPF L+ +AK
Subjt:  TFKMNGISADNIRLRLFPFFLQGRAK

A0A2H9ZY12 Uncharacterized protein2.6e-2344.22Show/hide
Query:  MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-
        M +    DL PFD EIERT  ++ R+ K +                M DQ  I    + +REY  P  N   T +V   + ANNFE+K  LIQM+++   
Subjt:  MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-

Query:  FRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        F GL ++DPN+H+ NFLEIC TFK NG+S D IRLRLFPF L+ +AK
Subjt:  FRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

A0A438CET1 Uncharacterized protein4.8e-2245Show/hide
Query:  MPKGRATDLHPFDLEIERTCRRLLREGKT----ETHTMVDQELINNPKP---IREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATE
        M + R+ DL P DL+I +T ++L ++ K     E  T+ D+   +N  P   +++YF P  N   + I   PI AN+FE+K  +IQM++    FRGLA +
Subjt:  MPKGRATDLHPFDLEIERTCRRLLREGKT----ETHTMVDQELINNPKP---IREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATE

Query:  DPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        DPN H+ NFLEIC TFK NG++ D IRLRLFPF+L  +AK
Subjt:  DPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

A0A6P6W382 uncharacterized protein LOC1137297692.4e-2143.97Show/hide
Query:  DLHPFDLEIERTCRRLLR----EGKTETHTMVDQELIN------------NPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLAT
        ++ PFD EIER  RR  R    + + E    +++ LI             N + +R++  P     QT I    +NANNFE+K  LIQMV++  + G AT
Subjt:  DLHPFDLEIERTCRRLLR----EGKTETHTMVDQELIN------------NPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLAT

Query:  EDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK
        EDPNSHL  FLEIC T K NG+S D I+LRLFPF L+ +AK
Subjt:  EDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCA
GGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTA
AGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATG
AACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCA
GGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTA
AGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATG
AACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG
Protein sequenceShow/hide protein sequence
MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKM
NGISADNIRLRLFPFFLQGRAKKC