; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008163 (gene) of Snake gourd v1 genome

Gene IDTan0008163
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein GLE1 isoform X2
Genome locationLG04:803572..806423
RNA-Seq ExpressionTan0008163
SyntenyTan0008163
Gene Ontology termsGO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0005643 - nuclear pore (cellular component)
InterPro domainsIPR012476 - GLE1-like
IPR038506 - GLE1-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5545226.1 hypothetical protein DKX38_013338 [Salix brachista]1.3e-1548.7Show/hide
Query:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRC-SPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        +P CPQTIS+AAFAKKV     +  C                                 ++VVS C SPDN A FACGHVIVL+TSQ+P AM L+LAEF+
Subjt:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRC-SPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSK
        RACIYT PKH+ YSK
Subjt:  RACIYTAPKHVAYSK

KAF9677858.1 hypothetical protein SADUNF_Sadunf08G0151400 [Salix dunnii]1.0e-1549.57Show/hide
Query:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRC-SPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        +P CPQTIS+AAFAKKV     +  C                                 ++VVS C SPDN A FACGHVIVL+TSQ+P AM LLLAEF+
Subjt:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRC-SPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSK
        RACIYT PKH+ YSK
Subjt:  RACIYTAPKHVAYSK

XP_022957183.1 protein GLE1 isoform X2 [Cucurbita moschata]1.3e-1547.86Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKHV YS+ A
Subjt:  RACIYTAPKHVAYSKVA

XP_023544608.1 protein GLE1 isoform X1 [Cucurbita pepo subsp. pepo]1.3e-1547.86Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKHV YS+ A
Subjt:  RACIYTAPKHVAYSKVA

XP_023544617.1 protein GLE1 isoform X2 [Cucurbita pepo subsp. pepo]1.3e-1547.86Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKHV YS+ A
Subjt:  RACIYTAPKHVAYSKVA

TrEMBL top hitse value%identityAlignment
A0A5N5LSV9 Uncharacterized protein6.5e-1648.7Show/hide
Query:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRC-SPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        +P CPQTIS+AAFAKKV     +  C                                 ++VVS C SPDN A FACGHVIVL+TSQ+P AM L+LAEF+
Subjt:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRC-SPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSK
        RACIYT PKH+ YSK
Subjt:  RACIYTAPKHVAYSK

A0A6J1GYI2 protein GLE1 isoform X16.5e-1647.86Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKHV YS+ A
Subjt:  RACIYTAPKHVAYSKVA

A0A6J1GZI1 protein GLE1 isoform X26.5e-1647.86Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKHV YS+ A
Subjt:  RACIYTAPKHVAYSKVA

A0A6J1K7Y4 protein GLE1 isoform X18.4e-1647.01Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKH+ YS+ A
Subjt:  RACIYTAPKHVAYSKVA

A0A6J1KA84 protein GLE1 isoform X28.4e-1647.01Show/hide
Query:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN
        MDPLCPQTISIAAFAKK                                             VVS+C     A FAC HVIVL+TSQ+P AMVLLLAEF+
Subjt:  MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFN

Query:  RACIYTAPKHVAYSKVA
        RACIYT PKH+ YS+ A
Subjt:  RACIYTAPKHVAYSKVA

SwissProt top hitse value%identityAlignment
Q0WPZ7 Protein GLE11.8e-0734.48Show/hide
Query:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFNR
        DP CP +ISIAAFAKK+                                            V ++  P+    FAC +VIV + SQ P  M +LLAEF++
Subjt:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFNR

Query:  ACIYTAPKHVAYSKVA
        ACIYT PKH+  S+ A
Subjt:  ACIYTAPKHVAYSKVA

Arabidopsis top hitse value%identityAlignment
AT1G13120.1 null1.3e-0834.48Show/hide
Query:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFNR
        DP CP +ISIAAFAKK+                                            V ++  P+    FAC +VIV + SQ P  M +LLAEF++
Subjt:  DPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFNR

Query:  ACIYTAPKHVAYSKVA
        ACIYT PKH+  S+ A
Subjt:  ACIYTAPKHVAYSKVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCTTTGTCCACAAACCATTAGCATTGCGGCATTTGCAAAAAAGGTAACTTTATTTTCTGATATCTGTTCTTGTATTACTTTAGCTATCATGCAATTGGATCT
TGTTCTTGAAACTTTTCTTCATGCAGTTGGCCCAATTGGCTCGAAGCTTCTAACTTCCTTAGCTTTGATATTTCAGGTTGTTTCTAGATGTAGTCCAGATAATGCAGCGG
CTTTTGCCTGCGGTCATGTCATTGTTCTTCTTACCTCACAGATCCCAATTGCCATGGTTCTTCTTCTCGCAGAGTTCAATAGAGCTTGCATCTACACAGCCCCAAAGCAC
GTAGCATATTCAAAGGTAGCAGGTTTTGCTCTGTATGAAAATGTAAATCTCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTCTTTGTCCACAAACCATTAGCATTGCGGCATTTGCAAAAAAGGTAACTTTATTTTCTGATATCTGTTCTTGTATTACTTTAGCTATCATGCAATTGGATCT
TGTTCTTGAAACTTTTCTTCATGCAGTTGGCCCAATTGGCTCGAAGCTTCTAACTTCCTTAGCTTTGATATTTCAGGTTGTTTCTAGATGTAGTCCAGATAATGCAGCGG
CTTTTGCCTGCGGTCATGTCATTGTTCTTCTTACCTCACAGATCCCAATTGCCATGGTTCTTCTTCTCGCAGAGTTCAATAGAGCTTGCATCTACACAGCCCCAAAGCAC
GTAGCATATTCAAAGGTAGCAGGTTTTGCTCTGTATGAAAATGTAAATCTCAGTTGA
Protein sequenceShow/hide protein sequence
MDPLCPQTISIAAFAKKVTLFSDICSCITLAIMQLDLVLETFLHAVGPIGSKLLTSLALIFQVVSRCSPDNAAAFACGHVIVLLTSQIPIAMVLLLAEFNRACIYTAPKH
VAYSKVAGFALYENVNLS