; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008252 (gene) of Snake gourd v1 genome

Gene IDTan0008252
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:9472454..9472969
RNA-Seq ExpressionTan0008252
SyntenyTan0008252
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018826935.1 uncharacterized protein At4g02000-like [Juglans regia]1.0e-1432.08Show/hide
Query:  RFEKLNLTEEKQRRVVNIADE----EINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK
        +++KL L EE+   VV+I  E    E+  Y++  +++LV ++ ++R I  E  +AT+ KIW I +  K  +   N+++  F +Q++K R+  G PW+FD 
Subjt:  RFEKLNLTEEKQRRVVNIADE----EINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK

Query:  --------------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDE
                            Y SFW+  H+LPL+C T++  + +G++VG  EKVD +D+
Subjt:  --------------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDE

XP_022143536.1 uncharacterized protein LOC111013413 [Momordica charantia]3.0e-1441.35Show/hide
Query:  MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPW
        M +  + R+ E+L LT+E++  + ++ ++EI +Y+K  + +LV K+LT +NI  EVFK  +P+IW ++  VKI   GKNL+LC+F+  ++K++I N GP 
Subjt:  MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPW

Query:  IFDK
         FDK
Subjt:  IFDK

XP_041011352.1 uncharacterized protein At4g02000-like [Juglans microcarpa x Juglans regia]2.1e-1530.67Show/hide
Query:  RFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK----
        +++KL L EE+   ++ I D    E     +++LV +++++R I  E  +AT+ KIW I++  K  K   N+++  F +Q++K R+  G PW+FD     
Subjt:  RFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK----

Query:  ----------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL
                        + SFW+  H+LPL+C T++  V +G++VG  E+VD +D+    G+ L
Subjt:  ----------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL

XP_042939395.1 uncharacterized protein LOC122274420 [Carya illinoinensis]3.5e-1530.06Show/hide
Query:  RFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDKY---
        ++++L L EE+Q   +N+ D+  +E +   +++L+ KI ++R I  EV +AT+ KIW + + VK+ +   N+++  F    +K R+ +G PW+FD     
Subjt:  RFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDKY---

Query:  -----------------ASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL
                          SFW+  HDLPL+C T+  +  + +SVG  E V+ +++ +  GN L
Subjt:  -----------------ASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL

XP_042964753.1 uncharacterized protein LOC122298977 [Carya illinoinensis]4.6e-1530.25Show/hide
Query:  FEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFD------
        +  L L EE+   ++ I +E ++E +K  + +L+ KIL++R + ++V ++T+ KIW + +   + + G+N+Y+  F    +K RI  G PW FD      
Subjt:  FEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFD------

Query:  --------------KYASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL
                        A FW+ FH+LPL    R+  V LG+S+G  ++VD +D+    G++L
Subjt:  --------------KYASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL

TrEMBL top hitse value%identityAlignment
A0A2I4EX97 uncharacterized protein LOC1089935197.1e-1431.14Show/hide
Query:  NIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK
        ++ +R+E L LT EK+ ++V++ DE   E +   E +LV KI   RNI   V + T+ K+W I       + G N ++  F +Q +K RI +G PW+FD 
Subjt:  NIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK

Query:  Y--------------------ASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL
                               FW+ FHDLP+AC  +     LG +VG   +V+ +++ +  G+ L
Subjt:  Y--------------------ASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL

A0A2I4F5K7 uncharacterized protein At4g02000-like4.9e-1532.08Show/hide
Query:  RFEKLNLTEEKQRRVVNIADE----EINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK
        +++KL L EE+   VV+I  E    E+  Y++  +++LV ++ ++R I  E  +AT+ KIW I +  K  +   N+++  F +Q++K R+  G PW+FD 
Subjt:  RFEKLNLTEEKQRRVVNIADE----EINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDK

Query:  --------------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDE
                            Y SFW+  H+LPL+C T++  + +G++VG  EKVD +D+
Subjt:  --------------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVDREDE

A0A5C7H9Y2 CCHC-type domain-containing protein2.1e-1332.08Show/hide
Query:  MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPW
        ME  +I R+ EKL+L ++    +  I        E++L  +L+ K +TN+ I  E FK+TI  IW     V +   G N++   F++  ++ RI  GGPW
Subjt:  MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPW

Query:  IFDK--------------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVD
        +FDK                    Y  FW+  H+LPLAC  R+  + LG  VG  +++D
Subjt:  IFDK--------------------YASFWLHFHDLPLACFTRKAIVALGNSVGSFEKVD

A0A6J1CQJ5 uncharacterized protein LOC1110134131.4e-1441.35Show/hide
Query:  MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPW
        M +  + R+ E+L LT+E++  + ++ ++EI +Y+K  + +LV K+LT +NI  EVFK  +P+IW ++  VKI   GKNL+LC+F+  ++K++I N GP 
Subjt:  MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPW

Query:  IFDK
         FDK
Subjt:  IFDK

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.7e-1341.18Show/hide
Query:  EKLNLTEEK--------QRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIF
        E+L LT+E+        +  + ++ ++EI +Y+K  + +LV K+LT +NI  EVFK  +P+IW  +  VKI   GKNL+LC+F+  ++K++I N GPW F
Subjt:  EKLNLTEEK--------QRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIF

Query:  DK
        DK
Subjt:  DK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAACCGAACATATTTCGAAGATTTGAGAAGCTAAACCTAACAGAAGAAAAGCAAAGAAGGGTGGTTAACATCGCGGATGAAGAAATCAATGAATATGAGAAAAA
CCTGGAAAAAACCCTTGTCTATAAGATCCTCACGAATAGAAACATTGTGAGTGAAGTCTTTAAAGCCACCATTCCAAAGATCTGGGGCATCGATGAGGGTGTAAAAATCA
ACAAAGCAGGGAAGAACTTGTATCTATGCGAGTTTCGTCACCAGAAGGAAAAAACAAGAATAGAAAATGGAGGCCCGTGGATTTTCGACAAGTACGCCTCTTTCTGGTTG
CACTTCCATGACTTACCCCTAGCTTGTTTTACCAGGAAAGCCATCGTAGCCCTGGGTAACTCTGTAGGATCTTTTGAAAAGGTGGATCGTGAAGATGAACGTGCAAAGGG
TGGAAACACTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAACCGAACATATTTCGAAGATTTGAGAAGCTAAACCTAACAGAAGAAAAGCAAAGAAGGGTGGTTAACATCGCGGATGAAGAAATCAATGAATATGAGAAAAA
CCTGGAAAAAACCCTTGTCTATAAGATCCTCACGAATAGAAACATTGTGAGTGAAGTCTTTAAAGCCACCATTCCAAAGATCTGGGGCATCGATGAGGGTGTAAAAATCA
ACAAAGCAGGGAAGAACTTGTATCTATGCGAGTTTCGTCACCAGAAGGAAAAAACAAGAATAGAAAATGGAGGCCCGTGGATTTTCGACAAGTACGCCTCTTTCTGGTTG
CACTTCCATGACTTACCCCTAGCTTGTTTTACCAGGAAAGCCATCGTAGCCCTGGGTAACTCTGTAGGATCTTTTGAAAAGGTGGATCGTGAAGATGAACGTGCAAAGGG
TGGAAACACTCTATGA
Protein sequenceShow/hide protein sequence
MEEPNIFRRFEKLNLTEEKQRRVVNIADEEINEYEKNLEKTLVYKILTNRNIVSEVFKATIPKIWGIDEGVKINKAGKNLYLCEFRHQKEKTRIENGGPWIFDKYASFWL
HFHDLPLACFTRKAIVALGNSVGSFEKVDREDERAKGGNTL