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Tan0008291 (gene) of Snake gourd v1 genome

Gene IDTan0008291
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG01:4086179..4086923
RNA-Seq ExpressionTan0008291
SyntenyTan0008291
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]3.9e-0849.12Show/hide
Query:  SKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        +KP D+ F +V+ WVHF D+ LAC NK M  RLGNA+G FE+ +   N   WG+ +R
Subjt:  SKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.3e-0650Show/hide
Query:  SDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        S+L F+ VAFW+H  D+P++  NK M  RLGNA+G F + D      SWGAS+R
Subjt:  SDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.3e-0545.45Show/hide
Query:  PSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        PS+L F  +  WV F D+PL C  ++M  RLGNA+G FEE D  +    WG+++R
Subjt:  PSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]2.6e-0441.07Show/hide
Query:  KPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        +PSD+    V FWVH  ++PL   NK++ Q +GNA+G F + D  +  ++WG +MR
Subjt:  KPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

XP_042939567.1 uncharacterized protein LOC122274609 [Carya illinoinensis]1.2e-0436.21Show/hide
Query:  SKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMRG
        ++P  + FD V+FW+H L++PL+C   EM +++G+++G   E D   + ++WG  +RG
Subjt:  SKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMRG

TrEMBL top hitse value%identityAlignment
A0A392M033 CCHC-type domain-containing protein (Fragment)6.3e-0448.84Show/hide
Query:  KPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFD
        +PS+L  DHV+FWV   D+PL   ++ + ++LGN +GTFEE D
Subjt:  KPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFD

A0A6J1BSZ1 uncharacterized protein LOC1110054811.9e-0849.12Show/hide
Query:  SKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        +KP D+ F +V+ WVHF D+ LAC NK M  RLGNA+G FE+ +   N   WG+ +R
Subjt:  SKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

A0A6J1DU55 uncharacterized protein LOC1110231356.1e-0750Show/hide
Query:  SDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        S+L F+ VAFW+H  D+P++  NK M  RLGNA+G F + D      SWGAS+R
Subjt:  SDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

A0A6J1DX30 uncharacterized protein LOC1110248742.6e-0545.45Show/hide
Query:  PSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        PS+L F  +  WV F D+PL C  ++M  RLGNA+G FEE D  +    WG+++R
Subjt:  PSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

A0A6P9E8B9 uncharacterized protein At4g02000-like8.2e-0437.5Show/hide
Query:  KPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR
        +PS + FDH   W+  L++PL+  NKEM + +G ++G   E D   + L+WG  +R
Subjt:  KPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCCTGTACTCCAAACCTTCAGATCTTGTGTTTGACCATGTCGCCTTTTGGGTCCATTTTTTAGATATCCCGCTAGCGTGCTTCAATAAGGAGATGACTCAAAG
GCTAGGGAATGCCATGGGGACTTTCGAAGAATTTGACGAAGGCAACAATGTTTTGAGCTGGGGAGCCAGTATGAGGGGGACACCGATGGCTACCTCTCCATTAACCATCC
CTGATACGACGCTGAAGGATAAGGAACAATTGCCATCATCGTTCAATGTTGACGATTTTCTTCAGTCGCCATCTCCGATTATCATAAATGATGCATCAGACAAGGCAGAG
AAAGTGCAATCGTACATTAATGCAGGGCGAGAGCTGCGGAAGAGGCGAAATGGAAGGAAACCTTGTGTGCACGACGGCTGCGTTTCGATGGCAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCCTGTACTCCAAACCTTCAGATCTTGTGTTTGACCATGTCGCCTTTTGGGTCCATTTTTTAGATATCCCGCTAGCGTGCTTCAATAAGGAGATGACTCAAAG
GCTAGGGAATGCCATGGGGACTTTCGAAGAATTTGACGAAGGCAACAATGTTTTGAGCTGGGGAGCCAGTATGAGGGGGACACCGATGGCTACCTCTCCATTAACCATCC
CTGATACGACGCTGAAGGATAAGGAACAATTGCCATCATCGTTCAATGTTGACGATTTTCTTCAGTCGCCATCTCCGATTATCATAAATGATGCATCAGACAAGGCAGAG
AAAGTGCAATCGTACATTAATGCAGGGCGAGAGCTGCGGAAGAGGCGAAATGGAAGGAAACCTTGTGTGCACGACGGCTGCGTTTCGATGGCAAAATAA
Protein sequenceShow/hide protein sequence
MSFLYSKPSDLVFDHVAFWVHFLDIPLACFNKEMTQRLGNAMGTFEEFDEGNNVLSWGASMRGTPMATSPLTIPDTTLKDKEQLPSSFNVDDFLQSPSPIIINDASDKAE
KVQSYINAGRELRKRRNGRKPCVHDGCVSMAK