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Tan0008295 (gene) of Snake gourd v1 genome

Gene IDTan0008295
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG05:66866447..66866797
RNA-Seq ExpressionTan0008295
SyntenyTan0008295
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]2.7e-3164.35Show/hide
Query:  SSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHG
        S   + I+  VEKFDG+INFGLWQVQVKDVLIQSGLHKALKGRPT ++S D   T       +   +S MSDE+W++LDLRAASAIRL LAKN+ AN+HG
Subjt:  SSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHG

Query:  ISTAKEFWKKLETVY
        ISTAK+ W+KLE +Y
Subjt:  ISTAKEFWKKLETVY

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.9e-2963.96Show/hide
Query:  SPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTA
        SP++  VEK+DG+INFGLWQVQVKDVLIQSGLHKAL+G+PT   S D   T   D            DEEW++LDLRAASAIRL LAKN+ ANVHGISTA
Subjt:  SPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTA

Query:  KEFWKKLETVY
        K+ W+KLE +Y
Subjt:  KEFWKKLETVY

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.1e-2963.96Show/hide
Query:  SPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTA
        SP++  VEK+DG+INFGLWQVQVKDVLIQSGLHKAL+G+PT   S D   T   D            DEEW++LDLRAASAIRL LAKN+ ANVHGISTA
Subjt:  SPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTA

Query:  KEFWKKLETVY
        K+ W+KLE +Y
Subjt:  KEFWKKLETVY

KAF7802225.1 cytochrome p450 [Senna tora]8.6e-3064.66Show/hide
Query:  MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVH
        MS F S +K  VEKFDG+INFGLWQVQVKDVLIQSGLHKAL+G+ + K     D  +S         +SSMSD +W+ELDLRAAS IRL+LAKN+ ANV 
Subjt:  MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVH

Query:  GISTAKEFWKKLETVY
        GISTAKE WKKLE +Y
Subjt:  GISTAKEFWKKLETVY

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.9e-4077.5Show/hide
Query:  MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRP----TEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIF
        MS FMSP+KI VEKFDG INFGLWQVQVKDVLIQS LHKALKGRP    +EKLS DG P  SS GSSRGSKKSSMS E+W+E+DLRAASAIR +LAKNI 
Subjt:  MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRP----TEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIF

Query:  ANVHGISTAKEFWKKLETVY
        ANVH ISTAKE W+KLE +Y
Subjt:  ANVHGISTAKEFWKKLETVY

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein2.5e-2761.06Show/hide
Query:  FMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGIS
        +M   K  +EKFDG+INFGLWQVQVKDVLIQSGLHKALK RPT   SG GD       SS  S+KS +SDEEW+ELD++  S IRL LAK +  NV G+S
Subjt:  FMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGIS

Query:  TAKEFWKKLETVY
        T K+ W+KLE +Y
Subjt:  TAKEFWKKLETVY

A0A2G3AMB5 Uncharacterized protein3.9e-2862.61Show/hide
Query:  SPIKIG----VEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHG
        +P+K+G    +EKFDG+INF LWQVQVKDVLIQSGL+KALK RPT +  GD D  +S   SS+ S+K  +SDEEW+ELD++AAS IRL LAKN+ ANV G
Subjt:  SPIKIG----VEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHG

Query:  ISTAKEFWKKLETVY
        +ST KE W+KLE +Y
Subjt:  ISTAKEFWKKLETVY

A0A2P5D0W5 Pol-like polyprotein/retrotransposon1.3e-2661.06Show/hide
Query:  FMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGIS
        F +P++  VEKFDG INFGLWQ+QVKD+LIQSGLHKALKGR  E L G            R S+KSSMSDE+W++LD RAASAIR+ LAKN+ ANV  I+
Subjt:  FMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGIS

Query:  TAKEFWKKLETVY
        TAK+ W KL  +Y
Subjt:  TAKEFWKKLETVY

A0A6A3DA47 CCHC-type domain-containing protein2.8e-2662.04Show/hide
Query:  KIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTAKEF
        +  +EKFDG+INFGLWQVQVKD+LIQSGL+KALKG+P     G  +P + SD SS    KS MS+EEW+ELD+RAAS IRL LAKN+ ANV   S+ KE 
Subjt:  KIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTAKEF

Query:  WKKLETVY
        W+KLE +Y
Subjt:  WKKLETVY

A0A6J1CG82 uncharacterized protein LOC1110105219.0e-4177.5Show/hide
Query:  MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRP----TEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIF
        MS FMSP+KI VEKFDG INFGLWQVQVKDVLIQS LHKALKGRP    +EKLS DG P  SS GSSRGSKKSSMS E+W+E+DLRAASAIR +LAKNI 
Subjt:  MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRP----TEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIF

Query:  ANVHGISTAKEFWKKLETVY
        ANVH ISTAKE W+KLE +Y
Subjt:  ANVHGISTAKEFWKKLETVY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-1238.39Show/hide
Query:  MSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGIST
        MS +K  V KF+G   F  WQ +++D+LIQ GLHK L          D D            K  +M  E+W +LD RAASAIRL+L+ ++  N+    T
Subjt:  MSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGIST

Query:  AKEFWKKLETVY
        A+  W +LE++Y
Subjt:  AKEFWKKLETVY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGTTTTATGAGTCCAATAAAGATTGGTGTGGAGAAATTTGACGGAAAGATAAACTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGGTT
ACACAAGGCTTTGAAGGGAAGACCAACTGAAAAGTTAAGCGGTGATGGTGATCCAACGAGGTCCAGCGATGGTTCCAGTAGAGGTTCTAAGAAGTCCAGCATGAGTGATG
AAGAATGGGATGAATTAGATTTGAGAGCTGCAAGTGCAATTAGACTAAATTTGGCTAAGAATATTTTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAGTTTTGGAAG
AAGCTTGAAACGGTGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGTTTTATGAGTCCAATAAAGATTGGTGTGGAGAAATTTGACGGAAAGATAAACTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGGTT
ACACAAGGCTTTGAAGGGAAGACCAACTGAAAAGTTAAGCGGTGATGGTGATCCAACGAGGTCCAGCGATGGTTCCAGTAGAGGTTCTAAGAAGTCCAGCATGAGTGATG
AAGAATGGGATGAATTAGATTTGAGAGCTGCAAGTGCAATTAGACTAAATTTGGCTAAGAATATTTTTGCAAATGTGCATGGAATTTCGACAGCCAAAGAGTTTTGGAAG
AAGCTTGAAACGGTGTATTAG
Protein sequenceShow/hide protein sequence
MSSFMSPIKIGVEKFDGKINFGLWQVQVKDVLIQSGLHKALKGRPTEKLSGDGDPTRSSDGSSRGSKKSSMSDEEWDELDLRAASAIRLNLAKNIFANVHGISTAKEFWK
KLETVY