; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008306 (gene) of Snake gourd v1 genome

Gene IDTan0008306
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG02:42730521..42731978
RNA-Seq ExpressionTan0008306
SyntenyTan0008306
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]3.1e-0670.27Show/hide
Query:  ILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        + L TL+VLRDN A+VS GR PLRQR+WECW+ PTTS
Subjt:  ILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-0674.36Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVL DN AVVS G+APLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]6.8e-0671.79Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVLR+N A VS GR PLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-0674.36Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVL DN AVVS G+APLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]8.9e-0671.79Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVLR+N A VS GR PLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.5e-0670.27Show/hide
Query:  ILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        + L TL+VLRDN A+VS GR PLRQR+WECW+ PTTS
Subjt:  ILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
A0A5A7T7M6 Reverse transcriptase1.9e-0674.36Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVL DN AVVS G+APLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
A0A5A7TDY3 Uncharacterized protein3.3e-0671.79Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVLR+N A VS GR PLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
A0A5D3BTP3 Reverse transcriptase1.9e-0674.36Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVL DN AVVS G+APLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
A0A5D3DUS7 Uncharacterized protein4.3e-0671.79Show/hide
Query:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
        ++  LSTLSVLR+N A VS GR PLRQRRWEC +GPTTS
Subjt:  ILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGGACAAAAGGGAAAAAGAAAGTAAAAGGTGGGACCCCCACATATGTTTTTCTTTTTAAAGAAATCCAAATCTGGAAACAACAGAAGTCTGTTTTTCGGAAAGT
AGCTTTCGAGGTATTTTTGAACCCATCTGTTGGGAATATCAATTTCATTCTTATTCTGTTGTCGACGTTGAGTGTACTTCGTGACAACAGCGCTGTCGTGAGTGTTGGGC
GGGCCCCACTACGACAAAGACGATGGGAGTGTTGGTCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGGACAAAAGGGAAAAAGAAAGTAAAAGGTGGGACCCCCACATATGTTTTTCTTTTTAAAGAAATCCAAATCTGGAAACAACAGAAGTCTGTTTTTCGGAAAGT
AGCTTTCGAGGTATTTTTGAACCCATCTGTTGGGAATATCAATTTCATTCTTATTCTGTTGTCGACGTTGAGTGTACTTCGTGACAACAGCGCTGTCGTGAGTGTTGGGC
GGGCCCCACTACGACAAAGACGATGGGAGTGTTGGTCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MKRTKGKKKVKGGTPTYVFLFKEIQIWKQQKSVFRKVAFEVFLNPSVGNINFILILLSTLSVLRDNSAVVSVGRAPLRQRRWECWSGPTTS