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Tan0008318 (gene) of Snake gourd v1 genome

Gene IDTan0008318
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-type domain-containing protein
Genome locationLG09:67117797..67118946
RNA-Seq ExpressionTan0008318
SyntenyTan0008318
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023470.1 hypothetical protein SDJN02_14495 [Cucurbita argyrosperma subsp. argyrosperma]5.0e-4479.51Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP I AAQALTRRSVLCLYTSNHET LASNPSLERSLL+EA EDDKLDG+AR+AKRRLD RLR+QRKS   R    
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
         K +W KLNW  VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

XP_022921934.1 uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]5.9e-4580.33Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP I AAQALTRRSVLCLYTSNHETLLASNPSLERSLL+EA EDDKLDG+AR+AKRRLD RLR+QRKS   R    
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
         K +W KLNW  VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

XP_022921935.1 uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata]2.0e-4580.33Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP I AAQALTRRSVLCLYTSNHETLLASNPSLERSLL+EA EDDKLDG+AR+AKRRLD RLR+QRKS        
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
        RK +W KLNW  VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

XP_023515554.1 uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]3.1e-4681.15Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP + AAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEA EDDKLDG+AR+AKRRLD RLR+QRKS        
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
        RKF+W KLNW +VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

XP_038876903.1 uncharacterized protein LOC120069257 [Benincasa hispida]2.1e-5082.79Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSPPI AAQALTRRSVLCLYTSNHE+LLASNPSL+RSLL+EA ED++LDG AR+AKRRLD RLR+QRKSEDGR M+ 
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
        RKFSW KLNW  VE+  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

TrEMBL top hitse value%identityAlignment
A0A1S3B9W3 uncharacterized protein LOC103487385 isoform X11.6e-4375Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARL-RSQRKSED-GRGM
        MAGMLPGVECARRRRCHQNK+WSDSP +  AQ LTRRSVLCLYTSNHE LL SNPS++R LL+EA  +D+LDG AR+AKRRLD RL R+QRKSED GR M
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARL-RSQRKSED-GRGM

Query:  VARKFSWIKLNWIAVEQQNCDQCW
        + RKFSW KLNWI VE+  C QCW
Subjt:  VARKFSWIKLNWIAVEQQNCDQCW

A0A5A7U973 Putative E3 ubiquitin-protein ligase RHY1A2.2e-4274.19Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARL-RSQRKSED-GRGM
        MAGMLPGVECARRRRCHQNK+WSDSP +  AQ LTRRSVLCLYTSNHE LL SNPS++R LL+EA  +D+LDG AR+AKRRLD RL R+QRKSED GR M
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARL-RSQRKSED-GRGM

Query:  VARKFSWIKLNWIAVEQQNCDQCW
        + RKFSW KLNWI VE+    QCW
Subjt:  VARKFSWIKLNWIAVEQQNCDQCW

A0A6J1E1Y4 uncharacterized protein LOC111430042 isoform X12.8e-4580.33Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP I AAQALTRRSVLCLYTSNHETLLASNPSLERSLL+EA EDDKLDG+AR+AKRRLD RLR+QRKS   R    
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
         K +W KLNW  VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

A0A6J1E765 uncharacterized protein LOC111430042 isoform X29.7e-4680.33Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP I AAQALTRRSVLCLYTSNHETLLASNPSLERSLL+EA EDDKLDG+AR+AKRRLD RLR+QRKS        
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
        RK +W KLNW  VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

A0A6J1JME7 uncharacterized protein LOC111485711 isoform X13.1e-4478.69Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA
        MAGMLPGVECARRRRCHQNKVWSDSP I AAQALTRRSVLCLYTSNHETLLASNPSLERSLL+EA EDDKL G+AR+AKRRLD RLR+Q KS        
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVA

Query:  RKFSWIKLNWIAVEQQNCDQCW
        RKF+W K NW  VEQ  C QCW
Subjt:  RKFSWIKLNWIAVEQQNCDQCW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G15580.1 RING/U-box superfamily protein6.3e-1348Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPI----------AAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEA---REDDKLDGAARDAKRRLDARLR
        MAGMLPGVECARRRR H       +PPI          AA    TRR    LYT+NHE+  A     ERS+  ++     D+KLDGAA++AK+RL+ RLR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPI----------AAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEA---REDDKLDGAARDAKRRLDARLR

AT2G15580.2 RING/U-box superfamily protein8.8e-1542.5Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPPI----------AAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEA---REDDKLDGAARDAKRRLDARLR
        MAGMLPGVECARRRR H       +PPI          AA    TRR    LYT+NHE+  A     ERS+  ++     D+KLDGAA++AK+RL+ RLR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPI----------AAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEA---REDDKLDGAARDAKRRLDARLR

Query:  SQRKSEDGRGMVARKFSWIK
           ++  G+ +  +  +W K
Subjt:  SQRKSEDGRGMVARKFSWIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAGAACAAAGTATGGTCAGATTCACCGCCCATCGCCGCCGCTCAGGCCTTGACCAGGAG
ATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCTTCTCTGGAAAGAAGCCTGTTAGTCGAGGCACGAGAAGACGATAAACTGGACGGAG
CCGCAAGAGATGCGAAGAGGAGATTGGACGCCCGATTGAGATCGCAGAGGAAATCAGAGGATGGAAGAGGGATGGTGGCGAGAAAGTTCAGTTGGATCAAGTTGAATTGG
ATCGCCGTCGAGCAACAGAATTGTGATCAGTGCTGGTGA
mRNA sequenceShow/hide mRNA sequence
AATCAATTGGACAGGTAAATTTCATGGAAGCTTCTCACCACCTTCATTACACTTTCTTCTTTCTCTTTCCGACAACTGAATCACCAAATTAAAGGCAGATCAAATAATTA
TTATTTTATGAAAGATCGATGGAATCAACGCAATCAAACTACATTTAATCGTTTCTCTCCGCCTTCTCAAACAACAAAGCCCTAGATCCCTGCAGAATTTTCAGCTTTCA
AGGTTTCGCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAGAACAAAGTATGGTCAGATTCACCGCCCATCGCCGCC
GCTCAGGCCTTGACCAGGAGATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCTTCTCTGGAAAGAAGCCTGTTAGTCGAGGCACGAGA
AGACGATAAACTGGACGGAGCCGCAAGAGATGCGAAGAGGAGATTGGACGCCCGATTGAGATCGCAGAGGAAATCAGAGGATGGAAGAGGGATGGTGGCGAGAAAGTTCA
GTTGGATCAAGTTGAATTGGATCGCCGTCGAGCAACAGAATTGTGATCAGTGCTGGTGATGAAGACGATTTGATTCCAGTGGATTGGTTTTTTTTTTTTTTTTTTTTAAT
TAGAACTGCCTCGTTGACTGTGACGAAAACATTTGTTAATATCTGTTCTGGCATGTAAAAGACAGTGGGTTTCTTTAATACAGAGACGTTTCTGGGTTTATTTGAATGAT
TCTGATTGTAATTTTGAAACAAAAATATTCTGTTTATTCAAAAGTAATTCTTATAGGATGAAAATCGTAATTAAAAATGTAAAATCAAACGTCAAGTTGATTTTCTAGAG
TCGTATTTTCCACTCCCAAGGGAAACTTTAACCTTTGAAAGCGACA
Protein sequenceShow/hide protein sequence
MAGMLPGVECARRRRCHQNKVWSDSPPIAAAQALTRRSVLCLYTSNHETLLASNPSLERSLLVEAREDDKLDGAARDAKRRLDARLRSQRKSEDGRGMVARKFSWIKLNW
IAVEQQNCDQCW