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Tan0008364 (gene) of Snake gourd v1 genome

Gene IDTan0008364
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:53830578..53831039
RNA-Seq ExpressionTan0008364
SyntenyTan0008364
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-3857.52Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL+D S  + ++ ++ + PDVMSVMMAD+ P+  MAEMERKIN LMK VEERD EI  L+ Q++ +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSK
          DKGK ++ E  P Q + SVASLSVQQLQDMI NSIRAQYGGP Q   +YSK
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSK

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.3e-3859.09Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL++    A ++  + + PDVMSVMMADV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
         +DKGK ++ E  P Q + SVASLSVQQLQDMI NSIRAQYGGP+Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]8.7e-3858.44Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL++    A ++  + + PDVMSVMMADV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
         +DKGK ++ E  P Q + SVASLSVQQLQDMI +SIRAQYGGP+Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]8.7e-3858.44Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL++    A ++  + + PDVMSVMMADV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
         +DKGK ++ E  P Q + SVASLSVQQLQDMI +SIRAQYGGP+Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.3e-3859.09Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL++    A ++  + + PDVMSVMMADV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
         +DKGK ++ E  P Q + SVASLSVQQLQDMI NSIRAQYGGP+Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein2.3e-3655.19Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A  I+K+L E+ K  +++K+N L+D S  A N+ ++ + PDV SVMMAD+  +  M EMERKIN LMK VEERD EI   + Q++ +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
          DKGK ++ E  P Q + SVASLSVQQLQDMI NSI+AQYGGP Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

A0A5A7U2G2 Ty3-gypsy retrotransposon protein2.1e-3755.84Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL+D S  A N+ ++ + PDVMSVMMAD+  +  MAE+ERK+N LMK VEERD  I  L+ Q++ +ETA+SSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
          DKGK ++ E  P Q + SVASLSVQQLQDMI NSIRAQYGGP Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

A0A5A7UF60 Ty3-gypsy retrotransposon protein1.8e-3655.19Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +  +I+K+L E+ K  +++K NPL+D S LA +  ++ + PDVMSVMMAD+  +  MAEME+KIN LMK VEERD EI  L+ Q++ +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
          DKGK ++ E  P Q + SVASLS+QQLQDMI NSIRAQYGG  Q   +Y KP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.9e-3857.52Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL+D S  + ++ ++ + PDVMSVMMAD+ P+  MAEMERKIN LMK VEERD EI  L+ Q++ +ETAESSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSK
          DKGK ++ E  P Q + SVASLSVQQLQDMI NSIRAQYGGP Q   +YSK
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSK

A0A5D3DXI6 Ty3-gypsy retrotransposon protein2.1e-3755.84Show/hide
Query:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR
        +A +I+K+L E+ K  +++K+NPL+D S  A N+ ++ + PDVMSVMMAD+  +  MAE+ERK+N LMK VEERD  I  L+ Q++ +ETA+SSQTP ++
Subjt:  MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIR

Query:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP
          DKGK ++ E  P Q + SVASLSVQQLQDMI NSIRAQYGGP Q   +YSKP
Subjt:  NNDKGKTIIHEEHPPQPA-SVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCAACATCATCAAACGGCTAGATGAGGCTTCAAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCTTGCTCTTAATCAACAAAGGGA
AACATCAACTCCTGATGTAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGACGGTAGAAGAGA
GGGATCTTGAAATTGCCTATCTCAAGAATCAGGTTCAAAACAAGGAAACGGCTGAATCTAGCCAGACCCCTGCAATAAGGAATAATGATAAGGGGAAAACCATCATCCAT
GAGGAACATCCGCCGCAACCGGCTTCAGTTGCTTCTCTGTCTGTCCAGCAACTACAGGACATGATCATGAACTCCATTAGAGCCCAATATGGCGGGCCAACTCAAAATCC
TCTATTGTACTCCAAACCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCAACATCATCAAACGGCTAGATGAGGCTTCAAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCTTGCTCTTAATCAACAAAGGGA
AACATCAACTCCTGATGTAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGACGGTAGAAGAGA
GGGATCTTGAAATTGCCTATCTCAAGAATCAGGTTCAAAACAAGGAAACGGCTGAATCTAGCCAGACCCCTGCAATAAGGAATAATGATAAGGGGAAAACCATCATCCAT
GAGGAACATCCGCCGCAACCGGCTTCAGTTGCTTCTCTGTCTGTCCAGCAACTACAGGACATGATCATGAACTCCATTAGAGCCCAATATGGCGGGCCAACTCAAAATCC
TCTATTGTACTCCAAACCGTAG
Protein sequenceShow/hide protein sequence
MASNIIKRLDEASKGKVIVKDNPLFDQSTLALNQQRETSTPDVMSVMMADVDPDERMAEMERKINLLMKTVEERDLEIAYLKNQVQNKETAESSQTPAIRNNDKGKTIIH
EEHPPQPASVASLSVQQLQDMIMNSIRAQYGGPTQNPLLYSKP