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Tan0008381 (gene) of Snake gourd v1 genome

Gene IDTan0008381
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:2682987..2685258
RNA-Seq ExpressionTan0008381
SyntenyTan0008381
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]1.7e-1330.12Show/hide
Query:  GLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD------VFGSGL-
        G+ + +++W  P  G +++N DA  +      GLG V +D NG+++   +  +S       AEA A+L   E A++QG+SNV +E+D         S L 
Subjt:  GLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD------VFGSGL-

Query:  -------ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
               +LE+++N++  +  +   +  R  N++AH LA W  S+   ++W   GP W+ DLI+ D
Subjt:  -------ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

PRQ37083.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]1.8e-1533.33Show/hide
Query:  KWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD--------------VFGSGL
        +W  P+ G L+LN DA+   +    G+G + ++  G+L+      I GRL P  AE + +LKG+E AV +G+S++ +ETD              +   GL
Subjt:  KWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD--------------VFGSGL

Query:  ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
        I+E I  ++    + G+ +  R  N  AHE+AG+         W GVGP WL D+I +D
Subjt:  ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]1.2e-1126.15Show/hide
Query:  ANQRVKWILNYHVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGM
        AN+ V+W  ++  E  K+   +      +   +   KW  P QG+ ++NTDA  +    + G+G V+++  G+++            P++AEA+A+L+G+
Subjt:  ANQRVKWILNYHVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGM

Query:  EMAVSQGFSNVWIETDVF--------------GSGLILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
         +A   GF    +E+D                  GL++++I+     +      + PR  NKVAH LA   LS+    +W+G  P+ + +L+M D
Subjt:  EMAVSQGFSNVWIETDVF--------------GSGLILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

TXG56118.1 hypothetical protein EZV62_017431 [Acer yangbiense]1.4e-1236.99Show/hide
Query:  DATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDV-------FGSGLILEEIINV-MIIYRL------
        DA  D S     LG V +D  GKL+  GA C +G +D   AE +AIL G+ +A+S+  + V +E+D         G+ L   E+ N+  +I+        
Subjt:  DATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDV-------FGSGLILEEIINV-MIIYRL------

Query:  -VGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
         + L +SPRS N VAH +A W L S  S  W    P WL  LI DD
Subjt:  -VGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]9.1e-1228.57Show/hide
Query:  QANKQKVHDANQRVKWILNY--HVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPL
        + + Q VHD +  + W  ++    +  KT++      + V       KW+    G  ++NTDAT D  A  TG+G V++DC G +++       G L P 
Subjt:  QANKQKVHDANQRVKWILNY--HVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPL

Query:  VAEAMAILKGMEMAVSQGFSNVWIETDVFGSGLILEEIINVMIIYRL-VGLI-----------------YSPRSTNKVAHELAGWTLSSRDSQLWTGVGP
          EA+A+L+G  +A+  G     IE+D     L +  +IN M I R  +G++                 + PR TN VAH LA  +LS     +W    P
Subjt:  VAEAMAILKGMEMAVSQGFSNVWIETDVFGSGLILEEIINVMIIYRL-VGLI-----------------YSPRSTNKVAHELAGWTLSSRDSQLWTGVGP

Query:  VWLNDLIMDD
        + +  L++ D
Subjt:  VWLNDLIMDD

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein8.0e-1430.12Show/hide
Query:  GLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD------VFGSGL-
        G+ + +++W  P  G +++N DA  +      GLG V +D NG+++   +  +S       AEA A+L   E A++QG+SNV +E+D         S L 
Subjt:  GLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD------VFGSGL-

Query:  -------ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
               +LE+++N++  +  +   +  R  N++AH LA W  S+   ++W   GP W+ DLI+ D
Subjt:  -------ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

A0A2P6QSB8 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein8.6e-1633.33Show/hide
Query:  KWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD--------------VFGSGL
        +W  P+ G L+LN DA+   +    G+G + ++  G+L+      I GRL P  AE + +LKG+E AV +G+S++ +ETD              +   GL
Subjt:  KWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD--------------VFGSGL

Query:  ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
        I+E I  ++    + G+ +  R  N  AHE+AG+         W GVGP WL D+I +D
Subjt:  ILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

A0A5C7HH69 RNase H domain-containing protein6.8e-1336.99Show/hide
Query:  DATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDV-------FGSGLILEEIINV-MIIYRL------
        DA  D S     LG V +D  GKL+  GA C +G +D   AE +AIL G+ +A+S+  + V +E+D         G+ L   E+ N+  +I+        
Subjt:  DATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDV-------FGSGLILEEIINV-MIIYRL------

Query:  -VGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
         + L +SPRS N VAH +A W L S  S  W    P WL  LI DD
Subjt:  -VGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

A0A5C7IIT4 Uncharacterized protein4.4e-1228.57Show/hide
Query:  QANKQKVHDANQRVKWILNY--HVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPL
        + + Q VHD +  + W  ++    +  KT++      + V       KW+    G  ++NTDAT D  A  TG+G V++DC G +++       G L P 
Subjt:  QANKQKVHDANQRVKWILNY--HVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPL

Query:  VAEAMAILKGMEMAVSQGFSNVWIETDVFGSGLILEEIINVMIIYRL-VGLI-----------------YSPRSTNKVAHELAGWTLSSRDSQLWTGVGP
          EA+A+L+G  +A+  G     IE+D     L +  +IN M I R  +G++                 + PR TN VAH LA  +LS     +W    P
Subjt:  VAEAMAILKGMEMAVSQGFSNVWIETDVFGSGLILEEIINVMIIYRL-VGLI-----------------YSPRSTNKVAHELAGWTLSSRDSQLWTGVGP

Query:  VWLNDLIMDD
        + +  L++ D
Subjt:  VWLNDLIMDD

A0A7C8ZSU5 Uncharacterized protein5.2e-1330.92Show/hide
Query:  NQRVKWILN-----------YHVEIYK-TIEKNKYKNEEVGLPKQ-EEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDP
        N R KWI             Y V+ ++  +E  K K   + L K+  E W+ P  GI+++NTDA+   SA   GLGAV +D  G L++     + G  D 
Subjt:  NQRVKWILN-----------YHVEIYK-TIEKNKYKNEEVGLPKQ-EEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDP

Query:  LVAEAMAILKGMEMAVSQGFSNVWIETDVFG--------------SGLILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWL
          +E  A+  GM++A S GF++V +ETD                 S   +++  ++M  +  +  +++ RS NKVAHELA   L+   +++W   GP+ +
Subjt:  LVAEAMAILKGMEMAVSQGFSNVWIETDVFG--------------SGLILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWL

Query:  NDLIMDD
          L+M D
Subjt:  NDLIMDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein6.7e-0524.68Show/hide
Query:  KWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDV-----------FGSGLI--
        +W+ P    ++ N DA  D        G ++++  G  IS G+  ++   +PL AE  A+L  ++    +G++ V++E D            F S L   
Subjt:  KWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDV-----------FGSGLI--

Query:  LEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD
        LE+I      +  +   +  R  NK+AH LA +  +       +G  P+WL+    +D
Subjt:  LEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDD

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.7e-0428.24Show/hide
Query:  PKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD
        P +  KW  P +  L+ N DA+     T +GLG +L++  G +I  G     GR+    AE   ++  ++ +   G   V  E D
Subjt:  PKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGKLISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGCATATCAACCCCTAGTTTTTCCTTGATACCGAATGGAAAAACAAGAGGTTTTATAGAACCCCAAAGAGGGTTGAGACAAGCAAATAAACAGAAAGTCCATGA
TGCTAATCAGAGGGTCAAATGGATATTAAATTATCATGTTGAAATTTATAAGACAATAGAAAAAAACAAATACAAGAATGAAGAGGTGGGCTTACCGAAGCAGGAGGAAA
AATGGCAAACCCCCGTGCAAGGTATCCTCGAGCTGAACACAGACGCGACATGTGATCCTTCTGCAACGGCAACAGGTCTCGGAGCAGTCCTCAAAGATTGTAATGGAAAG
TTGATCTCGGATGGTGCATGGTGTATCTCAGGTCGATTAGATCCTCTAGTTGCGGAAGCCATGGCGATCTTGAAGGGGATGGAAATGGCGGTGAGTCAAGGCTTCTCGAA
TGTCTGGATAGAGACTGATGTGTTTGGCAGTGGTTTAATTCTAGAGGAAATCATAAATGTGATGATCATATATAGGCTTGTTGGGTTGATCTACAGTCCCCGATCCACGA
ACAAAGTAGCTCATGAGCTAGCTGGTTGGACTTTATCTTCAAGAGATTCTCAATTATGGACAGGTGTTGGGCCTGTTTGGCTTAATGACCTAATTATGGATGATATGGCC
CTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTGCATATCAACCCCTAGTTTTTCCTTGATACCGAATGGAAAAACAAGAGGTTTTATAGAACCCCAAAGAGGGTTGAGACAAGCAAATAAACAGAAAGTCCATGA
TGCTAATCAGAGGGTCAAATGGATATTAAATTATCATGTTGAAATTTATAAGACAATAGAAAAAAACAAATACAAGAATGAAGAGGTGGGCTTACCGAAGCAGGAGGAAA
AATGGCAAACCCCCGTGCAAGGTATCCTCGAGCTGAACACAGACGCGACATGTGATCCTTCTGCAACGGCAACAGGTCTCGGAGCAGTCCTCAAAGATTGTAATGGAAAG
TTGATCTCGGATGGTGCATGGTGTATCTCAGGTCGATTAGATCCTCTAGTTGCGGAAGCCATGGCGATCTTGAAGGGGATGGAAATGGCGGTGAGTCAAGGCTTCTCGAA
TGTCTGGATAGAGACTGATGTGTTTGGCAGTGGTTTAATTCTAGAGGAAATCATAAATGTGATGATCATATATAGGCTTGTTGGGTTGATCTACAGTCCCCGATCCACGA
ACAAAGTAGCTCATGAGCTAGCTGGTTGGACTTTATCTTCAAGAGATTCTCAATTATGGACAGGTGTTGGGCCTGTTTGGCTTAATGACCTAATTATGGATGATATGGCC
CTTCCTTAA
Protein sequenceShow/hide protein sequence
MNCISTPSFSLIPNGKTRGFIEPQRGLRQANKQKVHDANQRVKWILNYHVEIYKTIEKNKYKNEEVGLPKQEEKWQTPVQGILELNTDATCDPSATATGLGAVLKDCNGK
LISDGAWCISGRLDPLVAEAMAILKGMEMAVSQGFSNVWIETDVFGSGLILEEIINVMIIYRLVGLIYSPRSTNKVAHELAGWTLSSRDSQLWTGVGPVWLNDLIMDDMA
LP