; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008389 (gene) of Snake gourd v1 genome

Gene IDTan0008389
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiondiphthamide biosynthesis protein 3-like
Genome locationLG02:9548356..9551124
RNA-Seq ExpressionTan0008389
SyntenyTan0008389
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007872 - DPH-type metal-binding domain
IPR036671 - DPH-type metal-binding domain superfamily
IPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022429.1 DPH3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-4095.29Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS QK+N GLEPSKQRP VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]1.8e-4090.59Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDSDQK+NKG++PSKQ+P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
XP_022931585.1 diphthamide biosynthesis protein 3-like [Cucurbita moschata]1.8e-4095.29Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS QK+N GLEPSKQRP VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]3.6e-4194.12Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSD K+NKGL+PSKQ+P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]1.6e-4195.29Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS+QK+NKGLEPSKQ+P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
TrEMBL top hitse value%identityAlignment
A0A1S3BZL5 diphthamide biosynthesis protein 3-like1.5e-4092.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS+QK+NKGLEPSKQ P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
A0A5A7SJN1 Diphthamide biosynthesis protein 3-like1.5e-4092.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS+QK+NKGLEPSKQ P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
A0A6J1C519 diphthamide biosynthesis protein 3-like8.6e-4190.59Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDSDQK+NKG++PSKQ+P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
A0A6J1EZW6 diphthamide biosynthesis protein 3-like8.6e-4195.29Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS QK+N GLEPSKQRP VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
A0A6J1I4L9 diphthamide biosynthesis protein 3-like1.7e-4194.12Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSD K+NKGL+PSKQ+P+VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
SwissProt top hitse value%identityAlignment
Q21102 DPH3 homolog1.7e-1759.02Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
Q4R312 DPH3 homolog3.7e-1757.38Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
Q6VUC1 DPH3 homolog2.9e-1757.38Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
Q96FX2 DPH3 homolog3.7e-1757.38Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
Q9VGQ9 DPH3 homolog1.5e-1858.82Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKS
        +D+VEIED E++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F  + D++S
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKS
Arabidopsis top hitse value%identityAlignment
AT2G15910.1 CSL zinc finger domain-containing protein1.3e-3376.83Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPL
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  D    + K  EP  + P+
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPL
AT2G15910.2 CSL zinc finger domain-containing protein1.2e-3476.47Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  D    + K  EP  + P+ VA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACGACGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACAAAGGAGGATCT
TAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATTTACAACATGGAAGATTTTCTCGGAGACTCTGATCAGAAGAGTAACAAAGGAC
TCGAGCCCTCTAAACAACGGCCTCTCGTCGTCGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAATTGAAGTTTATCCTTTTAAAATAGGAAAATAAAACTAGAATTTAACGTGTTACGCTTTGCGAACTAGTTTGATAAGAAAGCCTAATTTAGACGCGGTCTCTCGAAAT
TCAGAGTCCAAAGAAACCCAAATCCCTCGCCCTTCCTCAATCTCCTTCGTCTTCCTCCGAATTCGGCGGTTGCAGACTTGACGTCGCCGGTCGAATCCACCGGAGCAACG
ATGTCGTACGACGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACAAAGGAGGATCT
TAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATTTACAACATGGAAGATTTTCTCGGAGACTCTGATCAGAAGAGTAACAAAGGAC
TCGAGCCCTCTAAACAACGGCCTCTCGTCGTCGCTTAAGAATTCAGAATGCTCGTTTATGAATCATGGTGTCACCACGGCAGCTGCACTTGTTGCAGATGAAATTTTGTC
AGTCACTGTCAATTCTGAGGTGTTCGTTTGCATTAAAGTTTCTTCTTTTTCTTTTCTTTTATTTTATTTCCCGAAGTTATCTAGGTAGTTGAGGAAGGTAGAGTTGCATG
CGGAAAAATTCATTGAAGTACTATTTTTCTTCCTTCAAAAAGTAAAATATAGATCTTGATCTTTTCACACGCTAATGGTATTGAATGGGGGTTTCTTTGGTCGAACATAT
CTCCATGATCTGATAATGGAGAACTTTCAGACATAAGATGGACGAAAAACCATAATTATGTATGTAATCTTTTGATTGAAGGGGTAATGACTGATTACTTTTTCAGTTCA
CATTTGTCTCTCTTAGCTCTTCTGGTTTTTAATTTCATAATAATGACTTGTTTAGTAGCCCATTTGCATATTAGATTGTGTGATGGATTGATCAAAGTGTATGAACTCAT
CAAAAACATTCAGACTACTACCTTCTTGCAAATGCTGATTAGCTAGATTTCTTGAAAGTTCGGTTGAATTAGATGTCGAAAGCAATTCAAGGTGTATTTTTACCTTTCTA
TTTAGAAACATTTTTCTTTCTGAAAGTTGAAGAACAGTATGAATGTTGCAAAGAGAGTGATTTTGAGCTGAGAACACCCATTTCTCTGGACTCGAGAGATATGTTTGTTA
TTGATATATTTTTATTAATATATGCACAGCAGTTTCTGAGTTTTTAAA
Protein sequenceShow/hide protein sequence
MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSDQKSNKGLEPSKQRPLVVA