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Tan0008392 (gene) of Snake gourd v1 genome

Gene IDTan0008392
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:57638695..57638943
RNA-Seq ExpressionTan0008392
SyntenyTan0008392
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833196.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.5e-1555.84Show/hide
Query:  GTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        G  + G ++ + FE L L+ ++    KPS EEPPTLELK LPTHLKYAYLG+  TLPVIIS+AL+ +CE+ LL++L+
Subjt:  GTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

XP_024022975.1 uncharacterized protein LOC112092050 [Morus notabilis]3.6e-1455Show/hide
Query:  IAHVGTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVL
        +  VGTKQ+G   +  FESL L E     +KPS +E P LELKPLP+HL+YAYLG+  TLPVIISS+L  + E+ LL+ L
Subjt:  IAHVGTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVL

XP_024024961.1 uncharacterized protein LOC112092618 [Morus notabilis]1.2e-1462.32Show/hide
Query:  NRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        +R  FESL L+E+ L   KPS EEPP LEL+PLP HL+YAYLG +DTLPVII+S L+G  E +LL+VL+
Subjt:  NRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

XP_028792064.1 uncharacterized protein LOC114747886 [Prosopis alba]2.1e-1465.15Show/hide
Query:  QFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        QFESL L  +T   +KPS E+PP LELKPLP+HLKYAYLG ++TLPV+ISS+LS E E++LL VL+
Subjt:  QFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

XP_038891567.1 uncharacterized protein LOC120080956 [Benincasa hispida]2.8e-1467.16Show/hide
Query:  SQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        S FE L L+E T   IKPS EEPP LELKPLP HLKYAYLG ND LPVIISS+LS E +  L+ +LR
Subjt:  SQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

TrEMBL top hitse value%identityAlignment
A0A1U7Z0I7 uncharacterized protein LOC1045890226.2e-1256.1Show/hide
Query:  IAHVGTKQYGGV-NRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        I ++G KQ G V  R +F  L ++  +  A KPS E+PPTLELKPLP+HLKY YLG + TL VIISS L+G  E+KL+ VLR
Subjt:  IAHVGTKQYGGV-NRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

A0A2G9IBE4 Uncharacterized protein4.7e-1275Show/hide
Query:  IKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        +KPS EEPPTLELKPLP+HL+YAYLG++DTLPVIISS+LS    +KLL VLR
Subjt:  IKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

A0A5B6UKZ2 Integrase, catalytic core4.7e-1258.21Show/hide
Query:  SQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        + F+ L L+ ++    +PS EEPPTLELK LP HLKYAYLG N+TLPV+IS+ L+ + E KLLDV+R
Subjt:  SQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

A0A5B6URH9 Retrovirus-related Pol polyprotein from transposon 17.61.4e-1150Show/hide
Query:  TKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        TK+    +R  FES  L++ +    +PS E P TLELKP P HLKYAYLG N+TLP++IS+ L+ + + KLL+VL+
Subjt:  TKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

A0A5B6VN19 Retrovirus-related Pol polyprotein from transposon 17.64.7e-1251.28Show/hide
Query:  VGTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR
        +  +Q G   RS FE L+L++ +    +PS ++PP LELKPLP HLKYA LG+N+TLPV+ S+ L+ E E +LL+VLR
Subjt:  VGTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCTCATGTGGGTACCAAACAGTATGGTGGTGTGAATCGAAGCCAGTTTGAGTCATTGAGTCTTGCAGAGAAAACTTTACTTGCAATCAAACCATCAGCTGAAGA
GCCACCTACTTTGGAGCTTAAACCACTGCCCACACATTTGAAATATGCATACCTCGGGAAAAATGACACTTTGCCAGTAATCATATCATCAGCCTTGAGTGGAGAATGTG
AACAGAAACTGTTAGATGTACTGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGCTCATGTGGGTACCAAACAGTATGGTGGTGTGAATCGAAGCCAGTTTGAGTCATTGAGTCTTGCAGAGAAAACTTTACTTGCAATCAAACCATCAGCTGAAGA
GCCACCTACTTTGGAGCTTAAACCACTGCCCACACATTTGAAATATGCATACCTCGGGAAAAATGACACTTTGCCAGTAATCATATCATCAGCCTTGAGTGGAGAATGTG
AACAGAAACTGTTAGATGTACTGAGATAG
Protein sequenceShow/hide protein sequence
MIAHVGTKQYGGVNRSQFESLSLAEKTLLAIKPSAEEPPTLELKPLPTHLKYAYLGKNDTLPVIISSALSGECEQKLLDVLR