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Tan0008418 (gene) of Snake gourd v1 genome

Gene IDTan0008418
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG09:35804375..35804797
RNA-Seq ExpressionTan0008418
SyntenyTan0008418
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.1e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
A0A5A7TU93 Gag/pol protein4.1e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
A0A5A7TWB9 Gag/pol protein4.1e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
A0A5A7V4M1 Gag/pol protein4.1e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
A0A5D3CPJ6 Gag/pol protein4.1e-4069.06Show/hide
Query:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MF Q S Q +H +LKY+YN+ M EG+SVREHVL++MVHFNVAE+NGAVI+E SQV FILESL +SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
        Q  GE N+   +R+F +GS+SGTKS  S SG KK +KKK
Subjt:  QADGETNLFVHSRRFQKGSSSGTKSCSSFSGLKKTQKKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAACAACCGTCTGGACAGCATCGGCACAAATCCCTAAAATACGTTTATAACTCCCATATGAAGGAGGGGTCGTCGGTGAGAGAACACGTTCTCGATCTAATGGT
CCACTTCAACGTGGCTGAAATCAACGGTGCAGTCATTAACGAGCAAAGTCAGGTCCCGTTCATCCTGGAATCTCTTTCGAAGAGTTTCCTGCAATTTCGCAATAATGCGG
TGATGAACAAGATAGAGTATAACCTGACTACTCTTCTTAATGAACTACAAACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGACAAATCTGTTTGTC
CATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAGTTCATTTTCTGGGCTTAAGAAGACCCAAAAGAAGAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAACAACCGTCTGGACAGCATCGGCACAAATCCCTAAAATACGTTTATAACTCCCATATGAAGGAGGGGTCGTCGGTGAGAGAACACGTTCTCGATCTAATGGT
CCACTTCAACGTGGCTGAAATCAACGGTGCAGTCATTAACGAGCAAAGTCAGGTCCCGTTCATCCTGGAATCTCTTTCGAAGAGTTTCCTGCAATTTCGCAATAATGCGG
TGATGAACAAGATAGAGTATAACCTGACTACTCTTCTTAATGAACTACAAACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGACAAATCTGTTTGTC
CATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAGTTCATTTTCTGGGCTTAAGAAGACCCAAAAGAAGAAGATATGA
Protein sequenceShow/hide protein sequence
MFEQPSGQHRHKSLKYVYNSHMKEGSSVREHVLDLMVHFNVAEINGAVINEQSQVPFILESLSKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGETNLFV
HSRRFQKGSSSGTKSCSSFSGLKKTQKKKI