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Tan0008426 (gene) of Snake gourd v1 genome

Gene IDTan0008426
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA polymerase delta subunit 4
Genome locationLG07:5705674..5707111
RNA-Seq ExpressionTan0008426
SyntenyTan0008426
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]2.6e-5185.83Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MAS RGGLKDFYKQRK SGISKA  KASK SSRKTKSPANSA+LGSD VQPAAL+SHGSLDL+DDYG SEN LRQFDMNT YGPCLGMTRM RWERAC+L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP++I TLLKAGKVQLE LWDSRV
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]1.5e-5185.83Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MAS RGGLKDFYKQRK SGISKA  KASK SSRKTKSPANSA+LGS+ VQPAAL+SHGSLDL+DDYGESENMLRQFDMN  YGPCLGMTRM RWERAC+L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP++I TLLKAGKVQLE LWDSRV
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]7.7e-4881.89Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MASARGG+KDFYKQRK SG+S    K SK SSRKTKS ANSATL SDGVQPAALISHGSLDLRDDYGESEN+LRQFDMN  YGPCLGMTRM+RWE A  L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP+EIETLLK GKVQLE LW SR+
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

XP_023532644.1 uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]2.2e-4781.1Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MASARGG+KDFYKQRK SG+S    K SK SSRKTKS ANSATL SDGVQPA LISHGSLDLRDDYGESEN+LRQFDMN  YGPCLGMTRM+RWE A  L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP+EIETLLK GKVQLE LW SR+
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]2.7e-5387.4Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MASARGGLKDFYKQRK SGISKAN+KASK SSRK KSPANSA+LGSD VQPAALISHGSLDL+DDYG  ENMLRQFDMN  YGPCLGMTRM RWERACNL
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP++IETLLKA KVQLE LWDSRV
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein1.2e-5185.83Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MAS RGGLKDFYKQRK SGISKA  KASK SSRKTKSPANSA+LGSD VQPAAL+SHGSLDL+DDYG SEN LRQFDMNT YGPCLGMTRM RWERAC+L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP++I TLLKAGKVQLE LWDSRV
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 47.3e-5285.83Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MAS RGGLKDFYKQRK SGISKA  KASK SSRKTKSPANSA+LGS+ VQPAAL+SHGSLDL+DDYGESENMLRQFDMN  YGPCLGMTRM RWERAC+L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP++I TLLKAGKVQLE LWDSRV
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 47.3e-5285.83Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MAS RGGLKDFYKQRK SGISKA  KASK SSRKTKSPANSA+LGS+ VQPAAL+SHGSLDL+DDYGESENMLRQFDMN  YGPCLGMTRM RWERAC+L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP++I TLLKAGKVQLE LWDSRV
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591433.7e-4881.89Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MASARGG+KDFYKQRK SG+S    K SK SSRKTKS ANSATL SDGVQPAALISHGSLDLRDDYGESEN+LRQFDMN  YGPCLGMTRM+RWE A  L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP+EIETLLK GKVQLE LW SR+
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911829.2e-4780.31Show/hide
Query:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL
        MASARGG+KDFYKQRK SG+S    K SK SS KTKS A+SATL SDGVQPAALISHGSLDLRDDYGESEN+LRQFDMN  YGPCLGMTRM+RWE A  L
Subjt:  MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNL

Query:  GLNPPREIETLLKAGKVQLESLWDSRV
        GLNPP+EIETLLK GKVQLE LW SR+
Subjt:  GLNPPREIETLLKAGKVQLESLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 41.2e-0655.81Show/hide
Query:  ENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLL
        E +L  FD    YGP LGMTRMQRW+RA N  LNPP  +  +L
Subjt:  ENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLL

Q3T0X9 DNA polymerase delta subunit 44.7e-0851.06Show/hide
Query:  ESENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLLKA
        E   +LRQFD+   YGPC G+TR+QRW RA  +GL PP E+  +L++
Subjt:  ESENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLLKA

Q9CWP8 DNA polymerase delta subunit 42.8e-0858.14Show/hide
Query:  MLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLLKA
        +LRQFD+   YGPC G+TR+QRW RA  +GL PP E+  +LKA
Subjt:  MLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLLKA

Q9HCU8 DNA polymerase delta subunit 46.2e-0850.98Show/hide
Query:  RDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLLK
        RD+      +LRQFD+   YGPC G+TR+QRW RA  +GL PP E+  +LK
Subjt:  RDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIETLLK

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 44.7e-3561.54Show/hide
Query:  MASARGGLKDFYKQRKKS---GISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERA
        MA+    LK FYKQ K +   GISK     SK SSRK  +P ++A  GSD  QPAALISHGS+DL +DY + E MLRQFDMN  YGPCLGMTR+ RWERA
Subjt:  MASARGGLKDFYKQRKKS---GISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERA

Query:  CNLGLNPPREIETLLKAGKVQLESLWDSRV
          LG+NPP EIE LLK GKVQ + LW  RV
Subjt:  CNLGLNPPREIETLLKAGKVQLESLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGGCTCGGGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAAGAGTGGAATCTCCAAGGCCAACAACAAGGCTTCAAAATCCTCTTCTAGAAAAACCAAATC
TCCGGCCAACTCTGCAACTTTGGGCTCCGATGGCGTCCAACCGGCGGCGCTTATTTCTCACGGTTCCCTGGATCTTCGAGATGATTATGGCGAGTCTGAGAATATGTTGA
GGCAATTTGACATGAACACGGTCTATGGACCTTGCCTTGGAATGACCAGAATGCAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAGAGAAATTGAGACA
CTCTTAAAGGCTGGCAAAGTGCAGTTAGAGTCCTTGTGGGATTCCCGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
AAGAAGAACAACAACAAATTCAAAATTTGAAAATCGATCAGAGAGATAGAGAGGGAGAAAAATGGCTTCGGCTCGGGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAA
AGAGTGGAATCTCCAAGGCCAACAACAAGGCTTCAAAATCCTCTTCTAGAAAAACCAAATCTCCGGCCAACTCTGCAACTTTGGGCTCCGATGGCGTCCAACCGGCGGCG
CTTATTTCTCACGGTTCCCTGGATCTTCGAGATGATTATGGCGAGTCTGAGAATATGTTGAGGCAATTTGACATGAACACGGTCTATGGACCTTGCCTTGGAATGACCAG
AATGCAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAGAGAAATTGAGACACTCTTAAAGGCTGGCAAAGTGCAGTTAGAGTCCTTGTGGGATTCCCGAG
TTTAAAGACTATTATGCTAGCTGTGTTATTTTTGGGTAATGTATGAACTGTATGCTGTGCTTTTGGACAAAATCTTCAGCCTCTGGCTGAAATGATAATCACTTTTTCTA
TGATGTGAATGGGCTAGAATGTTTACTGATGTCAACTATCTAGTTATTTACCTTTTCGATTATGTGTTGCAAACCTCTACCATGTAATGTACAGTTAAATTTGGTGGATT
TTTTCCTTTCCTGGTGTTGTTATATTTGCTCAAATAACTTATTGTTTTTAGTTTCTAACTTGATTTCATGTGTGGATCTGTGATTGAAATGCCTTTCAGTTCCAGAAAAT
GAAGAGGAACAAAGATCTTACGA
Protein sequenceShow/hide protein sequence
MASARGGLKDFYKQRKKSGISKANNKASKSSSRKTKSPANSATLGSDGVQPAALISHGSLDLRDDYGESENMLRQFDMNTVYGPCLGMTRMQRWERACNLGLNPPREIET
LLKAGKVQLESLWDSRV