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Tan0008440 (gene) of Snake gourd v1 genome

Gene IDTan0008440
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPhotosystem II PsbX
Genome locationLG09:63308240..63308623
RNA-Seq ExpressionTan0008440
SyntenyTan0008440
Gene Ontology termsGO:0006811 - ion transport (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009518 - Photosystem II PsbX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-4286.61Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTSAVS+ALP T+ATHKRLSN AFFNPLP SSSS SRKAI  AAP+SNG L V VRSSLKEKA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKR
        SIAAGG VV AILGAVIGV+NFDPVKR
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKR

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]8.2e-4285.83Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTS VS+ALP T+ATHKRLSN AFFNPLP SSSS SRKAI  AAP+S+GRL V VRSSLKEKA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKR
        SIAAGG VV AILGAVIGV+NFDPVKR
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKR

XP_022987287.1 uncharacterized protein LOC111484883 [Cucurbita maxima]2.0e-4083.46Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSS-SSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTS VS+ALP T+ATHKRLSN AFFNPLP+S SS  RKAI  AAP+SNGRL V VRSSLKEKA+TG++AAALTA+MVIPEVAEAAGPGVSPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSS-SSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKR
        SIAAGG VV AILGAVIGV+NFDPVKR
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKR

XP_023516825.1 uncharacterized protein LOC111780616 [Cucurbita pepo subsp. pepo]1.0e-3985.04Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTS VS+ALP TSATHKRLSN AFFNPLP SSSS SRKAI    P+SNGRL V VRSSLK KA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKR
        SIAAGG VV AILGAVIGV+NFDPVKR
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKR

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]7.0e-4185.04Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS
        MASTSA+SMALP T ATHK LSNDAFFNPLPS    SRKAI  AAP SNGR +V VRSSLKEKAV G+TAAALTA+MVIPEVAEAAGPGVSPSLKNFLLS
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS

Query:  IAAGGVVVFAILGAVIGVANFDPVKRS
        IAAGG VV AILGAVIGVANFDPVKRS
Subjt:  IAAGGVVVFAILGAVIGVANFDPVKRS

TrEMBL top hitse value%identityAlignment
A0A0A0LWL3 Uncharacterized protein4.6e-3881.1Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS
        MASTSA+SMALPFT AT K LSNDAFFNPLPS    SRK I   AP SNGR ++ VRSS KEKAV G++AAALTA+MVIPEVAEAAG GVSPSLKNFLLS
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS

Query:  IAAGGVVVFAILGAVIGVANFDPVKRS
        IAAGGVVV AILGAVIGVANFDPVKRS
Subjt:  IAAGGVVVFAILGAVIGVANFDPVKRS

A0A1S3BRD2 uncharacterized protein LOC1034923561.4e-3983.46Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS
        MASTSAVSMALPFT ATHK LSNDAFFNPLPS    SRK I  AAP SNGR +V VRSSLKEKAV G+TAAAL A+MVIPEVAEAAG GVSPSLKNFLLS
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS

Query:  IAAGGVVVFAILGAVIGVANFDPVKRS
        IAAGG VV AI GAVIGVANFDPVKRS
Subjt:  IAAGGVVVFAILGAVIGVANFDPVKRS

A0A6J1H8G2 uncharacterized protein LOC1114614524.0e-4285.83Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTS VS+ALP T+ATHKRLSN AFFNPLP SSSS SRKAI  AAP+S+GRL V VRSSLKEKA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKR
        SIAAGG VV AILGAVIGV+NFDPVKR
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKR

A0A6J1HV97 uncharacterized protein LOC1114677558.6e-3781.75Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS
        MAS  AVSMALP T A+ KRLSNDAFFNPLP   S SRKAI  AAP      +VVV SSLKEKAVTGLTAAAL+AAMVIPEVAEAAGPGVSPSLKNFLLS
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLS

Query:  IAAGGVVVFAILGAVIGVANFDPVKR
        IAAGGVVV AILGAVIGV+NFDPVKR
Subjt:  IAAGGVVVFAILGAVIGVANFDPVKR

A0A6J1J9Y5 uncharacterized protein LOC1114848839.8e-4183.46Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSS-SSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTS VS+ALP T+ATHKRLSN AFFNPLP+S SS  RKAI  AAP+SNGRL V VRSSLKEKA+TG++AAALTA+MVIPEVAEAAGPGVSPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSS-SSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKR
        SIAAGG VV AILGAVIGV+NFDPVKR
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G06520.1 photosystem II subunit X3.5e-2251.56Show/hide
Query:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLK-EKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL
        MASTSA+S+  P       +  +  F  PLP   S        A  ++ GR   +   +LK +KA+TG++AAALTA+MVIPE+AEAAG G+SPSLKNFLL
Subjt:  MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLK-EKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLL

Query:  SIAAGGVVVFAILGAVIGVANFDPVKRS
        SIA+GG+V+  I+G V+GV+NFDPVKR+
Subjt:  SIAAGGVVVFAILGAVIGVANFDPVKRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTCCGCCGTTTCAATGGCTTTGCCGTTCACCTCCGCCACCCACAAGCGCCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTACCTC
TCGCAAGGCGATCAACGTCGCCGCTCCTTCATCCAACGGGAGGCTCGTCGTCGTCGTCCGATCTTCCTTGAAGGAGAAGGCCGTCACTGGACTTACGGCCGCCGCGCTGA
CGGCGGCGATGGTGATTCCGGAGGTTGCAGAGGCTGCCGGTCCGGGAGTGTCGCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTTGTTGTGTTTGCC
ATATTGGGAGCTGTCATCGGCGTCGCGAACTTCGATCCGGTCAAGCGTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTTCCGCCGTTTCAATGGCTTTGCCGTTCACCTCCGCCACCCACAAGCGCCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTACCTC
TCGCAAGGCGATCAACGTCGCCGCTCCTTCATCCAACGGGAGGCTCGTCGTCGTCGTCCGATCTTCCTTGAAGGAGAAGGCCGTCACTGGACTTACGGCCGCCGCGCTGA
CGGCGGCGATGGTGATTCCGGAGGTTGCAGAGGCTGCCGGTCCGGGAGTGTCGCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTTGTTGTGTTTGCC
ATATTGGGAGCTGTCATCGGCGTCGCGAACTTCGATCCGGTCAAGCGTAGCTGA
Protein sequenceShow/hide protein sequence
MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFA
ILGAVIGVANFDPVKRS