CuGenDBv2

Gene ID	Tan0008455
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S6
Genome location	LG01:24252949..24256378
RNA-Seq Expression	Tan0008455
Synteny	Tan0008455
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-54

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK 
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEEDDDD--DDEEYDVEQEERKVE
        EL+KF RF+MIGDDD DEEDDDD  DDEEYDVEQEER  E
Subjt:  ELSKFSRFSMIGDDDVDEEDDDD--DDEEYDVEQEERKVE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

1.0e-51

82.73

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD KYGLEFLSEDD K 
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEEDDDDD-DEEYDVEQEERKVE
        ELSKF R  ++GDDD DEEDDDDD DEEYDVEQEE K E
Subjt:  ELSKFSRFSMIGDDDVDEEDDDDD-DEEYDVEQEERKVE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

1.7e-54

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEE--DDDDDDEEYDVEQEERKVE
        EL+KF RF MIGDDD DEE  DDDDDDEEYDVEQEER  E
Subjt:  ELSKFSRFSMIGDDDVDEE--DDDDDDEEYDVEQEERKVE

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

2.8e-52

83.09

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERK
        EL+KF RFSMIGDDD DEEDDDDDD++ + E E R+
Subjt:  ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERK

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

1.3e-54

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEE--DDDDDDEEYDVEQEERKVE
        EL+KF RF+MIGDDD DEE  DDDDDDEEYDVEQEER  E
Subjt:  ELSKFSRFSMIGDDDVDEE--DDDDDDEEYDVEQEERKVE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FW87 Uncharacterized protein

6.2e-50

83.06

Show/hide

Query:  VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKSELSKFSRFSMIG
        +GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGRYYQGQLMQMTMMATPN+N+ELHYLN EDRLLRWLLVKHR+ KYGLEFL+EDDGK ELSKF+R S+  
Subjt:  VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKSELSKFSRFSMIG

Query:  DDDVDEEDDDDDDEEYDVEQEERK
        D+D+DE+DDDDDDEEYDV+QEERK
Subjt:  DDDVDEEDDDDDDEEYDVEQEERK

A0A6J1CN79 uncharacterized protein LOC111013137

5.1e-52

82.73

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD KYGLEFLSEDD K 
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEEDDDDD-DEEYDVEQEERKVE
        ELSKF R  ++GDDD DEEDDDDD DEEYDVEQEE K E
Subjt:  ELSKFSRFSMIGDDDVDEEDDDDD-DEEYDVEQEERKVE

A0A6J1FEF6 uncharacterized protein LOC111443208

8.4e-55

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEE--DDDDDDEEYDVEQEERKVE
        EL+KF RF MIGDDD DEE  DDDDDDEEYDVEQEER  E
Subjt:  ELSKFSRFSMIGDDDVDEE--DDDDDDEEYDVEQEERKVE

A0A6J1KXT7 uncharacterized protein LOC111498530

1.3e-52

83.09

Show/hide

Query:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A L L   VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+
Subjt:  INRDASLRL---VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERK
        EL+KF RFSMIGDDD DEEDDDDDD++ + E E R+
Subjt:  ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERK

A0A7N2L1D1 Uncharacterized protein

1.9e-51

79.41

Show/hide

Query:  INRDASLRLV---GKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
        + ++A + LV   GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRYYQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK 
Subjt:  INRDASLRLV---GKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS

Query:  ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERK
        ELSKF+R S+  DDD DE+DDDDDD+EYDV+QEE+K
Subjt:  ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.5e-32

60.91

Show/hide

Query:  VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKSELSKFSRFSMIG
        +GKHV+ RNGV+T++KSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD+K G     ++D  +  ++ +  S+  
Subjt:  VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKSELSKFSRFSMIG

Query:  DDDVDEEDDD
            DE+D++
Subjt:  DDDVDEEDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

6.6e-28

56.36

Show/hide

Query:  VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKSELSKFSRFSMIG
        +GKHV+ RNGV+T++KSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD+K G     ++D  +  ++ +  S+  
Subjt:  VGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKSELSKFSRFSMIG

Query:  DDDVDEEDDD
            DE+D++
Subjt:  DDDVDEEDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGTTGGGGCATCCAGCAATCGGCAACTGGTGATTGGCGACGGCAGCGGCGGAGAGGGAGATAACAGAGAGAAGAAAGAAATCAGAGTGGCATATGCGGCTGCGGC
AAAGATGGGAGAAAGGAGAGAAATCAGAGAAAAAGAAGAGAAGATGAGCTCTAAAGGCCCATATAAGCGGCCCAGCCCATTTCATATACCAAAGATTAAACAAAGGAAAG
TTCATTTGCCCTCGTCGTCTCGCCCCATTTCACGAAAGCCTCTTCTAAAATCCGCAGCGGCGTCGGCGCCGACCGCCATTTCTCTCGGCAATTGGTTAAAATTTGGAACA
GTTCGAAAGAGGAGTTTTGCTGCTAACAGAGAACAGAAGATCAATCGAGATGCCTCTTTACGATTAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACGT
TAAGTCATTTGGAGTTGTTCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACA
AGGAGTTACATTATTTGAATAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACGTAAAATATGGCCTGGAATTCCTTAGTGAAGATGATGGAAAAAGT
GAACTCAGCAAATTTTCTCGATTTAGCATGATTGGAGACGATGACGTAGATGAAGAAGACGATGACGATGATGATGAAGAATACGACGTGGAACAAGAAGAGAGGAAAGT
AGAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAVGASSNRQLVIGDGSGGEGDNREKKEIRVAYAAAAKMGERREIREKEEKMSSKGPYKRPSPFHIPKIKQRKVHLPSSSRPISRKPLLKSAAASAPTAISLGNWLKFGT
VRKRSFAANREQKINRDASLRLVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDVKYGLEFLSEDDGKS
ELSKFSRFSMIGDDDVDEEDDDDDDEEYDVEQEERKVE

Tan0008455 (gene) of Snake gourd v1 genome