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Tan0008460 (gene) of Snake gourd v1 genome

Gene IDTan0008460
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPH, RCC1 and FYVE domains-containing protein 1-like
Genome locationLG05:81885159..81886199
RNA-Seq ExpressionTan0008460
SyntenyTan0008460
Gene Ontology termsNA
InterPro domainsIPR013591 - Brevis radix (BRX) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647162.1 hypothetical protein Csa_018818 [Cucumis sativus]1.5e-1835.77Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +RQKCELQE EL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  --------------------------------------------------------------------------------------------------VY
                                                                                                          VY
Subjt:  --------------------------------------------------------------------------------------------------VY

Query:  ITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVR
        ITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENREKVYERYNVR
Subjt:  ITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVR

KAF7812954.1 PH, RCC1 and FYVE domains-containing protein 1 [Senna tora]5.0e-1937.16Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +RQ+CELQELEL ++ K+T+EAMALA EESGKSKAAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  -------------------------------------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENW
                                                                           VYITL+ALRDGTRDLKRVRFS+RRFGEHQAE W
Subjt:  -------------------------------------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENW

Query:  WSENREKVYERYNVRART
        WSENREKVYERYNVR+ T
Subjt:  WSENREKVYERYNVRART

KYP74817.1 putative E3 ubiquitin-protein ligase HERC2 [Cajanus cajan]2.4e-2142.93Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------
        +RQ+CELQELEL +S KKT+EAMALA EES KSKAAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------

Query:  ---------------------CVV-----------------FVYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA
                              VV                  VYITLVALRDGTRDLKRVRFS+RRFGEHQAE WWSENR++VYERYNVR+
Subjt:  ---------------------CVV-----------------FVYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA

XP_022141432.1 uncharacterized protein LOC111011834 [Momordica charantia]6.6e-1935.48Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +RQKCELQELEL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------V
                                                                                                           V
Subjt:  ---------------------------------------------------------------------------------------------------V

Query:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA
        YITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENR+KVYERYNVR+
Subjt:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA

XP_023551654.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]6.6e-1935.48Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        ++QKCELQELEL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------V
                                                                                                           V
Subjt:  ---------------------------------------------------------------------------------------------------V

Query:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA
        YITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENREKVYERYNVR+
Subjt:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA

TrEMBL top hitse value%identityAlignment
A0A0A0KI75 Uncharacterized protein7.1e-1935.77Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +RQKCELQE EL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  --------------------------------------------------------------------------------------------------VY
                                                                                                          VY
Subjt:  --------------------------------------------------------------------------------------------------VY

Query:  ITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVR
        ITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENREKVYERYNVR
Subjt:  ITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVR

A0A151U6B9 Putative E3 ubiquitin-protein ligase HERC21.2e-2142.93Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------
        +RQ+CELQELEL +S KKT+EAMALA EES KSKAAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------

Query:  ---------------------CVV-----------------FVYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA
                              VV                  VYITLVALRDGTRDLKRVRFS+RRFGEHQAE WWSENR++VYERYNVR+
Subjt:  ---------------------CVV-----------------FVYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA

A0A5D3DJP6 E3 ubiquitin-protein ligase HERC2-like isoform X17.1e-1935.77Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +RQKCELQE EL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  --------------------------------------------------------------------------------------------------VY
                                                                                                          VY
Subjt:  --------------------------------------------------------------------------------------------------VY

Query:  ITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVR
        ITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENREKVYERYNVR
Subjt:  ITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVR

A0A6J1CJU4 uncharacterized protein LOC1110118343.2e-1935.48Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +RQKCELQELEL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------V
                                                                                                           V
Subjt:  ---------------------------------------------------------------------------------------------------V

Query:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA
        YITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENR+KVYERYNVR+
Subjt:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA

A0A6J1K3G5 PH, RCC1 and FYVE domains-containing protein 1-like7.1e-1935.08Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        ++QKCELQELEL KSLKKTREAMALA EESGKSKAAKEVIKLL AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------V
                                                                                                           V
Subjt:  ---------------------------------------------------------------------------------------------------V

Query:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA
        YITLVALRDGTRDLKRVRFS+RRFGEHQAENWWSENREKVY+RYNVR+
Subjt:  YITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA

SwissProt top hitse value%identityAlignment
O82281 Protein Brevis radix-like 14.1e-0855.56Show/hide
Query:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY
        VYIT+  L DGTR+L+RVRFS+ RFGE  A+ WW +NR+++  +Y
Subjt:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY

Q17TI5 Protein BREVIS RADIX1.4e-0857.78Show/hide
Query:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY
        VYIT+  L DGTR+L+RVRFS+ RFGE  A+ WW +NRE++  +Y
Subjt:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY

Q8GYL9 Protein Brevis radix-like 25.4e-0855.56Show/hide
Query:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY
        VYIT+ AL DGTR+L+RVRFS+ +FGE  A  WW +NR ++ ++Y
Subjt:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY

Q8GZ92 Protein Brevis radix-like 41.6e-0755.56Show/hide
Query:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY
        VYIT+  L  G R+L+RVRFS+ RFGE  A  WW ENR +++E+Y
Subjt:  VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERY

Q947D2 PH, RCC1 and FYVE domains-containing protein 12.9e-1731.95Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ-----------------CV-----------------------------------
        + QKCE QE+EL  S+KKT+EA+ALA EES KS+AAKE IK L AQ                 C+                                   
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ-----------------CV-----------------------------------

Query:  -------------------------------------------------------------------------------VFVYITLVALRDGTRDLKRVR
                                                                                         VYITLVAL DGTRDL+RVR
Subjt:  -------------------------------------------------------------------------------VFVYITLVALRDGTRDLKRVR

Query:  FSQRRFGEHQAENWWSENREKVYERYNVRARTSLDLDRLHR
        FS+RRFGEHQAE WWSENREKVYE+YNVR        + HR
Subjt:  FSQRRFGEHQAENWWSENREKVYERYNVRARTSLDLDRLHR

Arabidopsis top hitse value%identityAlignment
AT1G76950.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.0e-1831.95Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ-----------------CV-----------------------------------
        + QKCE QE+EL  S+KKT+EA+ALA EES KS+AAKE IK L AQ                 C+                                   
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ-----------------CV-----------------------------------

Query:  -------------------------------------------------------------------------------VFVYITLVALRDGTRDLKRVR
                                                                                         VYITLVAL DGTRDL+RVR
Subjt:  -------------------------------------------------------------------------------VFVYITLVALRDGTRDLKRVR

Query:  FSQRRFGEHQAENWWSENREKVYERYNVRARTSLDLDRLHR
        FS+RRFGEHQAE WWSENREKVYE+YNVR        + HR
Subjt:  FSQRRFGEHQAENWWSENREKVYERYNVRARTSLDLDRLHR

AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain8.8e-1431.77Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        + +K +LQE+EL ++ K+ +EA+A+  EE+ + KAAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  ---------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA--RTSLDLDR
                                         VYITL AL  G RDLKRVRFS++RF E QAE WW++NR +VYE+YNVR   + S DL R
Subjt:  ---------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRA--RTSLDLDR

AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain7.5e-1330.85Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------
        + +K +LQE+EL ++ K+ +EA+A+A EES + KAAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------

Query:  --------CVVF-----------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNV
                  VF                                         VYITL AL  G RDLKRVRFS++RF E QAE WW+ENR +VYE+YNV
Subjt:  --------CVVF-----------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNV

Query:  R
        R
Subjt:  R

AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain7.5e-1330.85Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------
        + +K +LQE+EL ++ K+ +EA+A+A EES + KAAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQ------------------------------------------------------

Query:  --------CVVF-----------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNV
                  VF                                         VYITL AL  G RDLKRVRFS++RF E QAE WW+ENR +VYE+YNV
Subjt:  --------CVVF-----------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNV

Query:  R
        R
Subjt:  R

AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain4.2e-1631.36Show/hide
Query:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------
        +R +CE+QE E+ KS+KK +EAM+LA EES KS+AAKEVIK L AQ                                                      
Subjt:  MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVF--------------------------------------------------

Query:  ------------------------------------------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEH
                                                                                VYITL+AL DGTRDLKRVRFS+RRF E 
Subjt:  ------------------------------------------------------------------------VYITLVALRDGTRDLKRVRFSQRRFGEH

Query:  QAENWWSENREKVYERYNVR
        QAE WWSENRE+VYE+YN+R
Subjt:  QAENWWSENREKVYERYNVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGAAATGTGAACTCCAGGAACTGGAGCTTCATAAATCTTTGAAGAAAACACGAGAAGCTATGGCATTGGCTAGAGAGGAGTCTGGTAAATCTAAAGCGGCGAA
AGAAGTTATCAAGTTACTAAATGCTCAGTGTGTAGTGTTCGTATATATCACTCTTGTGGCTCTGAGGGACGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCAGAGAA
GATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAAAAGGTATATGAGAGATATAACGTTCGAGCTCGGACAAGTCTTGATTTGGACCGACTTCACAGA
GGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGAAATGTGAACTCCAGGAACTGGAGCTTCATAAATCTTTGAAGAAAACACGAGAAGCTATGGCATTGGCTAGAGAGGAGTCTGGTAAATCTAAAGCGGCGAA
AGAAGTTATCAAGTTACTAAATGCTCAGTGTGTAGTGTTCGTATATATCACTCTTGTGGCTCTGAGGGACGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCAGAGAA
GATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAAAAGGTATATGAGAGATATAACGTTCGAGCTCGGACAAGTCTTGATTTGGACCGACTTCACAGA
GGCTGA
Protein sequenceShow/hide protein sequence
MRQKCELQELELHKSLKKTREAMALAREESGKSKAAKEVIKLLNAQCVVFVYITLVALRDGTRDLKRVRFSQRRFGEHQAENWWSENREKVYERYNVRARTSLDLDRLHR
G