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Tan0008501 (gene) of Snake gourd v1 genome

Gene IDTan0008501
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein EARLY FLOWERING 4-like
Genome locationLG04:1309709..1310101
RNA-Seq ExpressionTan0008501
SyntenyTan0008501
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]2.6e-5188.89Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MADNN RRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFST F+N+KPR+GKRG++N
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]2.5e-5492.86Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MAD N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFS+ FNN+K RNGKRGSSN
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]2.6e-5188.89Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MADNN RRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFST F+N+KPR+GKRG++N
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]6.7e-5593.65Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MAD N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFS+ FNNNK RNGKRGSSN
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]2.8e-5391.27Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MA+ N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFS+ FNN+K RNGKRGSSN
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein2.4e-5087.3Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MADNN RRKSK KPSATTTTTTTTTTSDD  H  FPDE D EVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFST F+N+KPR GKRG++N
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

A0A1S3CIT1 uncharacterized protein LOC1035014401.3e-5188.89Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MADNN RRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFST F+N+KPR+GKRG++N
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

A0A5A7SR92 Protein EARLY FLOWERING 41.3e-5188.89Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MADNN RRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFST F+N+KPR+GKRG++N
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

A0A6J1GYX8 protein EARLY FLOWERING 4-like3.2e-5593.65Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MAD N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFS+ FNNNK RNGKRGSSN
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

A0A6J1IH33 protein EARLY FLOWERING 4-like1.4e-5391.27Show/hide
Query:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM
        MA+ N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNV LIQELNGNISKVVSM
Subjt:  MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSN
        YSDFSSDFS+ FNN+K RNGKRGSSN
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSN

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 48.5e-2164.29Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NV LIQELNGNISKVV+MYSD ++ FS+ F+  K  NG  G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG

O80877 Protein ELF4-LIKE 12.7e-1450Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS

Q570U6 Protein ELF4-LIKE 45.5e-1246.15Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 36.5e-1338.46Show/hide
Query:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNHQ
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS     +   +   G  N +
Subjt:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNHQ

Q94BS8 Protein ELF4-LIKE 23.0e-1041.25Show/hide
Query:  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS
        + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 43.9e-1346.15Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 43.9e-1346.15Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 34.7e-1438.46Show/hide
Query:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNHQ
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS     +   +   G  N +
Subjt:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNHQ

AT2G29950.1 ELF4-like 11.9e-1550Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS

AT2G40080.1 Protein of unknown function (DUF1313)6.1e-2264.29Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NV LIQELNGNISKVV+MYSD ++ FS+ F+  K  NG  G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACAACAACCTCCGCCGCAAATCCAAGACGAAGCCGTCGGCAACCACCACTACCACCACCACAACCACCACCAGCGACGACGGCCAACACGACGGCTTCCCTGA
CGAATGCGACGCCGAGGTCTGGGCTTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGGAACAGAGTACTGATTCAACAGGTGAACGAGAATCACCAGT
CTCGAATTCCCAGTAACATGGTCGACAACGTGACTTTGATCCAAGAGCTCAATGGAAACATCTCCAAAGTTGTTTCCATGTACTCGGATTTCTCCTCTGATTTCTCCACT
GTGTTCAATAACAACAAACCCAGAAATGGCAAAAGGGGCAGCAGCAACCACCAAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACAACAACCTCCGCCGCAAATCCAAGACGAAGCCGTCGGCAACCACCACTACCACCACCACAACCACCACCAGCGACGACGGCCAACACGACGGCTTCCCTGA
CGAATGCGACGCCGAGGTCTGGGCTTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGGAACAGAGTACTGATTCAACAGGTGAACGAGAATCACCAGT
CTCGAATTCCCAGTAACATGGTCGACAACGTGACTTTGATCCAAGAGCTCAATGGAAACATCTCCAAAGTTGTTTCCATGTACTCGGATTTCTCCTCTGATTTCTCCACT
GTGTTCAATAACAACAAACCCAGAAATGGCAAAAGGGGCAGCAGCAACCACCAAGATGCTTGA
Protein sequenceShow/hide protein sequence
MADNNLRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVTLIQELNGNISKVVSMYSDFSSDFST
VFNNNKPRNGKRGSSNHQDA