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Tan0008536 (gene) of Snake gourd v1 genome

Gene IDTan0008536
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-H2 finger protein ATL18-like
Genome locationLG05:8565663..8566559
RNA-Seq ExpressionTan0008536
SyntenyTan0008536
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604984.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5675Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        MLGF+        A+ FF T++WIPL RLK+AI+  V VFRLA +PE DGS GGTLLVRRYEELQRSDDR   EEE+CSICL EFAR DSVC LPDCSHV
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        FHF+CIEKWLERNRFTCPLCRC FFFNI NRHE+ L+FVVPDNPSCLY+FLQ
Subjt:  FHFNCIEKWLERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ

KAG7010790.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-6382.78Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        MLG IFLNSR+  A+IFF TF+WIPLFR+KEAIL I  VFRLASLPE D S GGTLLVRRYEELQRSDDRT EEEEMCSICLTEFAREDSVC+LPDC+HV
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        FHF+CIEKW ERNRFTCPLCRC FFNIE  HE+ LRFVVPDNPS LY+FLQ
Subjt:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ

XP_022944066.1 RING-H2 finger protein ATL18-like [Cucurbita moschata]1.7e-6280.79Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        MLG IFLNSR+  A+IFF TF+WIPLFR+KEAIL +  VFRL SLPE D S GGTLLVRRYEELQRSDDR  EEEEMCSICLTEFAREDSVC+LPDC+HV
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        FHF+CIEKW ERNRFTCPLCRC FFNIE  HE+ LRFVVPDNPS LY+FLQ
Subjt:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ

XP_022947864.1 E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]3.1e-5674.19Show/hide
Query:  LGFIFLNSRMR----FALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDC
        L F+ L  R R     A+ FF T++WIPL RLK+AI+  V VFRLA +PE DGS GGTLLVRRYEELQRSDDR   EEE+CSICL EFAR DSVC LPDC
Subjt:  LGFIFLNSRMR----FALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDC

Query:  SHVFHFNCIEKWLERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        SHVFHF+CIEKWLERNRFTCPLCRC FFFNI NRHE+ L+FVVPDNPSCLY+FLQ
Subjt:  SHVFHFNCIEKWLERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ

XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]1.6e-6382.12Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        MLG IFLNSR+  A+IFF TF+WIPLFR+KEAIL +  VFRLASLPE D S GGTLLVRRYEELQRSDDRT EEEEMCSICLTEFAREDSVC+LPDC+HV
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        FHF+CIEKW ERNRFTCPLCRC FFNIE  HE+ LRFVVPDNPS LY+FLQ
Subjt:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TXY0 RING-H2 finger protein ATL18-like1.2e-4057.52Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVC-VFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAR-EDSVCELPDCS
        MLG  +L S MRF ++FF TFLWIPLFR+K+AIL +V  VF L S P+    G   ++VR Y+E     D     EE+CSICLTEF R EDSVC+LP+C 
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVC-VFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAR-EDSVCELPDCS

Query:  HVFHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        H+FHFNCI++W++RNRFTCPLCRCFF    ++ +   RF+VPDNPS LY+FLQ
Subjt:  HVFHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ

A0A6J1CHK3 RING-H2 finger protein ATL645.1e-4467.38Show/hide
Query:  MRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL
        MR  LIF Y  + IPLF LK+AILS+  VFR +S P            RRYEEL+R +D T E+E MCSICLTEFAR+DSV ELPDC+HVFH NCIEKW+
Subjt:  MRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL

Query:  ERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        ERN FTCPLCRC FFNIENR E+ LRFV+PDNPSCLY+FLQ
Subjt:  ERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ

A0A6J1FTE6 RING-H2 finger protein ATL18-like8.3e-6380.79Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        MLG IFLNSR+  A+IFF TF+WIPLFR+KEAIL +  VFRL SLPE D S GGTLLVRRYEELQRSDDR  EEEEMCSICLTEFAREDSVC+LPDC+HV
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        FHF+CIEKW ERNRFTCPLCRC FFNIE  HE+ LRFVVPDNPS LY+FLQ
Subjt:  FHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ

A0A6J1G855 E3 ubiquitin-protein ligase ATL41-like1.5e-5674.19Show/hide
Query:  LGFIFLNSRMR----FALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDC
        L F+ L  R R     A+ FF T++WIPL RLK+AI+  V VFRLA +PE DGS GGTLLVRRYEELQRSDDR   EEE+CSICL EFAR DSVC LPDC
Subjt:  LGFIFLNSRMR----FALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDC

Query:  SHVFHFNCIEKWLERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        SHVFHF+CIEKWLERNRFTCPLCRC FFFNI NRHE+ L+FVVPDNPSCLY+FLQ
Subjt:  SHVFHFNCIEKWLERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ

A0A6J1I5X8 RING-H2 finger protein ATL187.1e-5476.06Show/hide
Query:  MRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL
        M  + IFF T++WIPL RLK+AI+  V VFRLA +PE DGS GGTLLVRRYEELQR  DR   EEE+CSICL EFAR DSVC L DCSHVFHF+CIEKWL
Subjt:  MRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL

Query:  ERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ
        ERNRFTCPLCRC FFFNI NRHE+ L+FVVPDNPSCLY+FLQ
Subjt:  ERNRFTCPLCRC-FFFNIENRHEQNLRFVVPDNPSCLYFFLQ

SwissProt top hitse value%identityAlignment
Q6NKR1 RING-H2 finger protein ATL286.0e-1038.67Show/hide
Query:  PDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRC
        P+ +G    ++R +     S    K     C+ICL+EF+ ED+V  +  C H FH NCI+ W E ++ TCP+CRC
Subjt:  PDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRC

Q9FL07 RING-H2 finger protein ATL463.5e-1035.71Show/hide
Query:  LKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFN
        L +A +  + VF    +    G GGG              +   +E   C++CL EF+ +D +  LP CSH FH NCI+ WL+ N  TCPLCR   F+
Subjt:  LKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFN

Q9SUS5 E3 ubiquitin-protein ligase RHA1B4.6e-1040.35Show/hide
Query:  RSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL-ERNRFTCPLCR
        R  D   + E+ C++CL++F  +D + +LP C HVFH  C+++W+ + N+ TCP+CR
Subjt:  RSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL-ERNRFTCPLCR

Q9SZL4 RING-H2 finger protein ATL185.6e-1636.54Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        M+  +F  S +  A I FYT + IPL RLK+                 D  G   + V          D+ KEEE  C ICL EF  ED+V  LP C+H+
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRCFFF-------NIENRHEQNLRFVVPDNPSCLYFF
        FH NCIE WL R   TCPLCR F         N+ N H  +  ++     S  +FF
Subjt:  FHFNCIEKWLERNRFTCPLCRCFFF-------NIENRHEQNLRFVVPDNPSCLYFF

Q9XF92 Brassinosteroid-responsive RING protein 14.6e-1038.27Show/hide
Query:  LLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLR
        L V ++EEL  S +   +  E C++CL EF  E  +  L +C H+FH +C+++W++ ++ TCPLCR  F   E + E N R
Subjt:  LLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLR

Arabidopsis top hitse value%identityAlignment
AT3G61460.1 brassinosteroid-responsive RING-H23.3e-1138.27Show/hide
Query:  LLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLR
        L V ++EEL  S +   +  E C++CL EF  E  +  L +C H+FH +C+++W++ ++ TCPLCR  F   E + E N R
Subjt:  LLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFNIENRHEQNLR

AT4G11360.1 RING-H2 finger A1B3.3e-1140.35Show/hide
Query:  RSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL-ERNRFTCPLCR
        R  D   + E+ C++CL++F  +D + +LP C HVFH  C+++W+ + N+ TCP+CR
Subjt:  RSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL-ERNRFTCPLCR

AT4G38140.1 RING/U-box superfamily protein4.0e-1736.54Show/hide
Query:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV
        M+  +F  S +  A I FYT + IPL RLK+                 D  G   + V          D+ KEEE  C ICL EF  ED+V  LP C+H+
Subjt:  MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHV

Query:  FHFNCIEKWLERNRFTCPLCRCFFF-------NIENRHEQNLRFVVPDNPSCLYFF
        FH NCIE WL R   TCPLCR F         N+ N H  +  ++     S  +FF
Subjt:  FHFNCIEKWLERNRFTCPLCRCFFF-------NIENRHEQNLRFVVPDNPSCLYFF

AT5G40250.1 RING/U-box superfamily protein2.5e-1135.71Show/hide
Query:  LKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFN
        L +A +  + VF    +    G GGG              +   +E   C++CL EF+ +D +  LP CSH FH NCI+ WL+ N  TCPLCR   F+
Subjt:  LKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCRCFFFN

AT5G43200.1 Zinc finger, C3HC4 type (RING finger) family protein3.3e-1145.61Show/hide
Query:  QRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCR
        Q      +EE + C+ICL E +  D  CELP+C+H FH  C+ +WL R   +CPLCR
Subjt:  QRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNRFTCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGTTTTATTTTTCTCAATTCGCGTATGCGATTCGCCCTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCATCGT
TTGTGTTTTCCGCCTCGCATCTCTGCCGGAACCGGACGGCTCCGGCGGCGGAACGCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGACGATCGAACGAAGGAGG
AGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTC
GAGAGGAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCAACATCGAGAATCGCCATGAACAGAACCTCCGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTA
TTTTTTCTTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTCGAGACATTGAAAATATTTCAGCTTCACATCGTCGCCGGCCGGCCCTTCTTCTCCGCCGGTATCATCGCTCAACGAGAAGAGAAGTTGAAATTTTCGAAAGTCGCA
GAGCAGACCAATCAATATAATACGTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTGCTTCAATCGCTAAAACTTCCATTTGAAATTGAAACAATTTGGCCCACTACTTCCC
CAAAAGTCAGACTCCTCAGACCTTCAACTCCAATAATTTAATGGCGAAATCGGCGACTTAATCCTCTTCTCCACTCCTTAATCTCCTATATATACACCGCCTCTTCTTCA
ATCCTTCAATCGCAGCATCGCCATGTTAGGTTTTATTTTTCTCAATTCGCGTATGCGATTCGCCCTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCA
AGGAAGCGATTCTTAGCATCGTTTGTGTTTTCCGCCTCGCATCTCTGCCGGAACCGGACGGCTCCGGCGGCGGAACGCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGG
AGCGACGATCGAACGAAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTT
CAATTGCATCGAGAAGTGGCTCGAGAGGAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCAACATCGAGAATCGCCATGAACAGAACCTCCGCTTCGTCGTTC
CAGATAATCCTTCTTGCCTGTATTTTTTCTTGCAGTGATTTGTCTTCTGTTTCGTTTTCCATTTCGATTGCTTCGGATTTGGAAATCGCTATCGAATTTGTTCCTCGTGT
AAAAATCTTCCTTCTCA
Protein sequenceShow/hide protein sequence
MLGFIFLNSRMRFALIFFYTFLWIPLFRLKEAILSIVCVFRLASLPEPDGSGGGTLLVRRYEELQRSDDRTKEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWL
ERNRFTCPLCRCFFFNIENRHEQNLRFVVPDNPSCLYFFLQ