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Tan0008544 (gene) of Snake gourd v1 genome

Gene IDTan0008544
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG02:53283881..53287230
RNA-Seq ExpressionTan0008544
SyntenyTan0008544
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048153.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2460.66Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL
        DV+   + LHVP+G IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKM REKL +L+DGT ++KR       SK DLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL

Query:  TKLLVGCGEVLIKKMSQDNKEK
        TKLLVG    +I+K S  + EK
Subjt:  TKLLVGCGEVLIKKMSQDNKEK

KAA0063387.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.2e-2466.04Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+D TE++KR       SK DLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL

Query:  TKLLVG
        TKLLVG
Subjt:  TKLLVG

TYK04936.1 F15O4.13 [Cucumis melo var. makuwa]2.0e-1961.54Show/hide
Query:  VSETPYELCDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR
        ++   Y+  DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+D T ++KR
Subjt:  VSETPYELCDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.5e-2562.3Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+DGT ++KR       SK DLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL

Query:  TKLLVGCGEVLIKKMSQDNKEK
        TKLLVG    +I+K S  + EK
Subjt:  TKLLVGCGEVLIKKMSQDNKEK

TYK11649.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.6e-1967.07Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+DGT ++K+
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR

TrEMBL top hitse value%identityAlignment
A0A5A7TX19 Reverse transcriptase7.8e-2560.66Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL
        DV+   + LHVP+G IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKM REKL +L+DGT ++KR       SK DLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL

Query:  TKLLVGCGEVLIKKMSQDNKEK
        TKLLVG    +I+K S  + EK
Subjt:  TKLLVGCGEVLIKKMSQDNKEK

A0A5A7V8R2 Transposon Ty3-I Gag-Pol polyprotein6.0e-2566.04Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+D TE++KR       SK DLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL

Query:  TKLLVG
        TKLLVG
Subjt:  TKLLVG

A0A5D3C3D3 F15O4.139.9e-2061.54Show/hide
Query:  VSETPYELCDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR
        ++   Y+  DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+D T ++KR
Subjt:  VSETPYELCDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein7.1e-2662.3Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+DGT ++KR       SK DLRVIH L
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLRVIHLL

Query:  TKLLVGCGEVLIKKMSQDNKEK
        TKLLVG    +I+K S  + EK
Subjt:  TKLLVGCGEVLIKKMSQDNKEK

A0A5D3CN32 Transposon Ty3-I Gag-Pol polyprotein2.2e-1967.07Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR
        DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL N Q ETK FE K LYNVS+ SQ E+GVKMAREKL +L+DGT ++K+
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCCTCTAAGAGTGTTTCAGAAACACCCTACGAGTTATGTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAA
GAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTTGTGAATACACAAGGAGAGACCAAGATTTTTGAGCCTAAAATTCTTTATAATGTTAGTACAACAAGTCAAA
ATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGATCTAGGAGTGACCATCCTTATTCTAAGTGTGATCTAAGA
GTGATTCATCTTCTAACTAAACTCTTAGTTGGATGTGGAGAGGTCCTTATAAAAAAAATGTCACAAGATAATAAAGAAAAAGTTTCGCAAGTGGTAGATCCAAATATGGC
TATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGT
TTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATAAAGGGGGAAGTGAGGAATGTGTTGTTGACACAACAACCAAAATTTGTACTTATGTGCAAAGGAAT
GTGTCTAACAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCCTCTAAGAGTGTTTCAGAAACACCCTACGAGTTATGTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAA
GAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTTGTGAATACACAAGGAGAGACCAAGATTTTTGAGCCTAAAATTCTTTATAATGTTAGTACAACAAGTCAAA
ATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGATCTAGGAGTGACCATCCTTATTCTAAGTGTGATCTAAGA
GTGATTCATCTTCTAACTAAACTCTTAGTTGGATGTGGAGAGGTCCTTATAAAAAAAATGTCACAAGATAATAAAGAAAAAGTTTCGCAAGTGGTAGATCCAAATATGGC
TATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGT
TTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATAAAGGGGGAAGTGAGGAATGTGTTGTTGACACAACAACCAAAATTTGTACTTATGTGCAAAGGAAT
GTGTCTAACAACTAA
Protein sequenceShow/hide protein sequence
MVPSKSVSETPYELCDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNTQGETKIFEPKILYNVSTTSQNENGVKMAREKLSSLKDGTEDKKRSRSDHPYSKCDLR
VIHLLTKLLVGCGEVLIKKMSQDNKEKVSQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNKGGSEECVVDTTTKICTYVQRN
VSNN