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Tan0008588 (gene) of Snake gourd v1 genome

Gene IDTan0008588
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG06:41192308..41194618
RNA-Seq ExpressionTan0008588
SyntenyTan0008588
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]6.1e-3041.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]9.4e-3141.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.0e-0241.38Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+   P  P+    +P++S   S+IP
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]9.4e-3141.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.9e-3040.8Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +   ++N V          +    SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.0e-0241.38Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+   P  P+    +P++S   S+IP
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.1e-3041.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein2.9e-3041.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

A0A5A7TBK1 Retrotransposable element Tf24.5e-3141.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

A0A5A7TBK1 Retrotransposable element Tf23.4e-0241.38Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+   P  P+    +P++S   S+IP
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP

A0A5A7TBK1 Retrotransposable element Tf24.5e-3141.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +L  ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

A0A5A7U3G5 Polyprotein3.8e-3040.8Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

A0A5A7U3G5 Polyprotein2.6e-0239.56Show/hide
Query:  KASSSKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP
        + + SKGK P++ S+ P+ MSA+ YAMDL F QV+R    SA   +    +S + PP PS +L+RP+   P  P+    +P++S   S+IP
Subjt:  KASSSKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP

A0A5D3D2Q6 Retrotransposable element Tf23.4e-0241.38Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+   P  P+    +P++S   S+IP
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIP

A0A5D3D2Q6 Retrotransposable element Tf22.9e-3041.38Show/hide
Query:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA
        FGLSEEIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++ 
Subjt:  FGLSEEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNA

Query:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         FL +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  EFLNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATCAGCGAGGCAAAGCCTCATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTT
CACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCAATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTG
CCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCACTTTCGGCCTATCAGAAGAA
ATCTTTCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGAT
ATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAG
AAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAATTCTAAATCAAAGCTGCTAGCTGCCTTAGCACAAACA
ACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCCTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGA
TCCGTTTTTAGATTCCCAACCAATCTTGAAAGTTTTCCGATGCCCTTTGATTACAAGATTGAAGTCTTTTATAAACTCCGGATTTGAAATTACAATACAATGCAAAAAAC
TAAAAGATAAGATTCAATCCGACAGGACAAGACCCCTGACTGGATTGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATCAGCGAGGCAAAGCCTCATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTT
CACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCAATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTG
CCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCACTTTCGGCCTATCAGAAGAA
ATCTTTCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGAT
ATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAG
AAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAATTCTAAATCAAAGCTGCTAGCTGCCTTAGCACAAACA
ACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCCTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGA
TCCGTTTTTAGATTCCCAACCAATCTTGAAAGTTTTCCGATGCCCTTTGATTACAAGATTGAAGTCTTTTATAAACTCCGGATTTGAAATTACAATACAATGCAAAAAAC
TAAAAGATAAGATTCAATCCGACAGGACAAGACCCCTGACTGGATTGTTATGA
Protein sequenceShow/hide protein sequence
MSDQRGKASSSKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIPTTFVEATFGLSEE
IFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQT
TTEADLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPILKVFRCPLITRLKSFINSGFEITIQCKKLKDKIQSDRTRPLTGLL