CuGenDBv2

Gene ID	Tan0008618
Organism	Trichosanthes anguina (Snake gourd v1)
Description	nuclear pore complex protein GP210 isoform X2
Genome location	LG07:64989115..64990978
RNA-Seq Expression	Tan0008618
Synteny	Tan0008618
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581051.1 Nuclear pore complex protein 210, partial [Cucurbita argyrosperma subsp. sororia]

6.9e-46

94.29

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKI SQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

KAG7017783.1 Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.9e-46

94.29

Show/hide

Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKI SQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

XP_022934340.1 nuclear pore complex protein GP210 isoform X1 [Cucurbita moschata]

6.9e-46

94.29

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKI SQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

XP_022934341.1 nuclear pore complex protein GP210 isoform X2 [Cucurbita moschata]

6.9e-46

94.29

Show/hide

Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKI SQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

XP_038905765.1 nuclear pore complex protein GP210 [Benincasa hispida]

1.3e-47

97.14

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEE SQVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LI22 Uncharacterized protein

1.8e-44

91.43

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        M ITGGSCFLDAV NDSRIVEVI P PG+QC EL LSPKG+GTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEE SQVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

A0A6J1F1J2 nuclear pore complex protein GP210 isoform X2

3.4e-46

94.29

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKI SQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

A0A6J1F7E5 nuclear pore complex protein GP210 isoform X1

3.4e-46

94.29

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAPGIQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKI SQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

A0A6J1J4U8 nuclear pore complex protein GP210 isoform X2

4.4e-46

94.29

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAP IQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKISSQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

A0A6J1J529 nuclear pore complex protein GP210 isoform X1

4.4e-46

94.29

Show/hide

Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        MSITGGSCFLDAV NDSRIVEVIQPAP IQCRELVLSPKG+GTALVTVYDIGL PPLSSSAVVHV+DVDWIKISSQEEISLLEEG QVVDLAAGISDGST
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

SwissProt top hits

e value

%identity

Alignment

F4KHD8 Nuclear pore complex protein GP210

3.5e-32

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Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        +S+TGGSC  +AV N+SR+ EVI+P  G+QC +++LSPKG+GT +VTVYDIG++PPLS+ A++ VADVDWIKI+S +EIS++E  +  +DL  GI DG T
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G40480.1 embryo defective 3012

2.5e-33

Show/hide

Query:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST
        +S+TGGSC  +AV N+SR+ EVI+P  G+QC +++LSPKG+GT +VTVYDIG++PPLS+ A++ VADVDWIKI+S +EIS++E  +  +DL  GI DG T
Subjt:  MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGST

Query:  FDSSQ
        FDSSQ
Subjt:  FDSSQ

Sequences

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CDS sequence

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ATGTCGATTACTGGAGGGAGCTGTTTCTTGGATGCTGTTGCAAATGATTCTCGTATTGTTGAAGTTATTCAACCTGCTCCAGGTATACAATGCCGAGAGTTAGTGTTGTC
ACCTAAAGGAGTGGGGACTGCACTTGTGACAGTTTATGACATTGGGCTCAACCCTCCACTATCATCTTCCGCTGTGGTTCATGTTGCCGATGTAGACTGGATCAAGATTA
GCTCTCAAGAAGAAATAAGCCTTCTGGAAGAAGGCTCTCAAGTTGTTGATTTAGCTGCTGGGATTAGTGATGGAAGTACTTTTGACTCCTCCCAGAAGATCAATCATCTT
CAGGTAAGATTTCATTACGTTAGCGCAGTCCTTGGATGA

mRNA sequence

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Protein sequence

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MSITGGSCFLDAVANDSRIVEVIQPAPGIQCRELVLSPKGVGTALVTVYDIGLNPPLSSSAVVHVADVDWIKISSQEEISLLEEGSQVVDLAAGISDGSTFDSSQKINHL
QVRFHYVSAVLG

Tan0008618 (gene) of Snake gourd v1 genome