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Tan0008620 (gene) of Snake gourd v1 genome

Gene IDTan0008620
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-directed DNA polymerase
Genome locationLG04:7911343..7911681
RNA-Seq ExpressionTan0008620
SyntenyTan0008620
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039087.1 putative protein phosphatase 2C 25 [Cucumis melo var. makuwa]1.9e-1868.35Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIED-EDEALVVES
        MAYLR ER+P+ SYSKLKPRKIGPY+I +KI  NAYVL+L P I TS TFNV+DL  YH PDAAPTIE+ EDE   ++S
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIED-EDEALVVES

PKU64118.1 hypothetical protein MA16_Dca008024 [Dendrobium catenatum]4.4e-1556.25Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE
        M  +RRER   G+YSKL P+KIGP+ I +KI++NAY+++LP  IQTS TFNV+D+  YHPPDAA TI +  EA   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE

PKU67703.1 RNA-directed DNA polymerase [Dendrobium catenatum]2.6e-1565.15Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPT
        M  +RRER P G+YSKL PRKIGP+ I +KI++NAYV++LP  IQTS TFNVAD+  YHPPD A T
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPT

PKU75011.1 ATP-dependent DNA helicase RecG [Dendrobium catenatum]2.0e-1556.25Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE
        M  +RRER+P G+YSKL PRKIGP+ I  KI++NAYV++LP +I TS TFNVAD+ +YH PD+A  IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE

PKU86669.1 RNA-directed DNA polymerase [Dendrobium catenatum]2.1e-1758.75Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE
        M  +RRERHP G+YSKL PRKIGP+ I  KI++NAYV++LPP+I TSPTFNV+D+ +YHPPD    IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE

TrEMBL top hitse value%identityAlignment
A0A2I0VL32 Integrase catalytic domain-containing protein2.1e-1556.25Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE
        M  +RRER   G+YSKL P+KIGP+ I +KI++NAY+++LP  IQTS TFNV+D+  YHPPDAA TI +  EA   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE

A0A2I0VWB5 RNA-directed DNA polymerase1.3e-1565.15Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPT
        M  +RRER P G+YSKL PRKIGP+ I +KI++NAYV++LP  IQTS TFNVAD+  YHPPD A T
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPT

A0A2I0WH88 ATP-dependent DNA helicase RecG9.7e-1656.25Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE
        M  +RRER+P G+YSKL PRKIGP+ I  KI++NAYV++LP +I TS TFNVAD+ +YH PD+A  IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE

A0A2I0XFK1 RNA-directed DNA polymerase1.0e-1758.75Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE
        M  +RRERHP G+YSKL PRKIGP+ I  KI++NAYV++LPP+I TSPTFNV+D+ +YHPPD    IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAE

A0A5D3CWR3 Uncharacterized protein9.3e-1968.35Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIED-EDEALVVES
        MAYLR ER+P+ SYSKLKPRKIGPY+I +KI  NAYVL+L P I TS TFNV+DL  YH PDAAPTIE+ EDE   ++S
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIED-EDEALVVES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTACCTTCGACGTGAGAGACATCCTGTGGGTTCATATTCCAAGTTGAAGCCACGAAAGATTGGTCCCTACAGAATAGCAAAAAAAATCAGCAACAATGCTTATGT
TCTTGAGCTCCCTCCAGAAATACAAACTTCACCCACCTTTAATGTTGCTGATCTATGTGCTTATCACCCACCTGATGCTGCTCCAACAATCGAAGATGAAGATGAAGCAC
TTGTTGTCGAATCGGCGGAAGCGGTCAAAGTCACACCAATGGAAGCAGCCGAAATCGAAGAATTCACTGTGTCTAATAACATGCAGGTGAAGAAAAGGGAGATTCCTTGT
GTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTACCTTCGACGTGAGAGACATCCTGTGGGTTCATATTCCAAGTTGAAGCCACGAAAGATTGGTCCCTACAGAATAGCAAAAAAAATCAGCAACAATGCTTATGT
TCTTGAGCTCCCTCCAGAAATACAAACTTCACCCACCTTTAATGTTGCTGATCTATGTGCTTATCACCCACCTGATGCTGCTCCAACAATCGAAGATGAAGATGAAGCAC
TTGTTGTCGAATCGGCGGAAGCGGTCAAAGTCACACCAATGGAAGCAGCCGAAATCGAAGAATTCACTGTGTCTAATAACATGCAGGTGAAGAAAAGGGAGATTCCTTGT
GTTGTTTGA
Protein sequenceShow/hide protein sequence
MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVADLCAYHPPDAAPTIEDEDEALVVESAEAVKVTPMEAAEIEEFTVSNNMQVKKREIPC
VV