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Tan0008651 (gene) of Snake gourd v1 genome

Gene IDTan0008651
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG11:52376745..52377095
RNA-Seq ExpressionTan0008651
SyntenyTan0008651
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1051.25Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +ASS K+  CS+CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

KAA0054814.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-1048.75Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +AS+ K+  C++CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

TYK06319.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1051.25Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +ASS K+  CS+CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

WP_217833293.1 CCHC-type zinc finger protein, partial [Synechococcus sp. PCC 7002]2.8e-1255.95Show/hide
Query:  ASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG-TGRS
        ASS +KPLC T GKYH G+C    N C+NCGQ GHFK ECPQL+QE    Q+TTS  + Q Q       E TS  +QKG TGRS
Subjt:  ASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG-TGRS

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]7.6e-1051.25Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        VAS+ +KPLC  CGK H G C    NVCF C Q GHF+ + PQL       QR  +Q VNQ + T    GEG+S AKQKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

TrEMBL top hitse value%identityAlignment
A0A5A7TI15 Reverse transcriptase5.7e-1151.25Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +ASS K+  CS+CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

A0A5A7UI35 Reverse transcriptase3.7e-1048.75Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +AS+ K+  C++CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

A0A5A7V873 DNA/RNA polymerases superfamily protein4.8e-1047.5Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +AS+ ++  C++CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

A0A5D3C7J1 Reverse transcriptase5.7e-1151.25Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        +ASS K+  CS+CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

A0A5D3DU25 Uncharacterized protein3.7e-1048.75Show/hide
Query:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG
        VAS+ ++  C++CG+ H G+CL G  VC+ CGQ GHFK +CPQL       Q   SQTV +Q    V   EGTS A+QKG
Subjt:  VASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCGAGTAGCTAGTTCAAAGAAGAAACCTTTGTGCAGCACTTGTGGAAAGTATCATTTGGGTCGATGTTTGAGTGGCGAAAATGTATGTTTCAACTGTGGGCAAGG
TGGTCACTTCAAAATGGAATGCCCCCAGCTAATACAAGAAGGCCTGATAGGACAGAGAACCACGTCGCAGACCGTGAACCAACAGCAAAATACTGGGGTAGCTGGAGGAG
AAGGCACTAGTAGTGCTAAGCAGAAAGGGACAGGTAGGTCGACCCCGACAACAAGGGAAGATTTACGCCATGACACAGCAAGAGGTAGAGGATGCACCAGAAGTTGTTAC
GGGTACACTTTCTATCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCGAGTAGCTAGTTCAAAGAAGAAACCTTTGTGCAGCACTTGTGGAAAGTATCATTTGGGTCGATGTTTGAGTGGCGAAAATGTATGTTTCAACTGTGGGCAAGG
TGGTCACTTCAAAATGGAATGCCCCCAGCTAATACAAGAAGGCCTGATAGGACAGAGAACCACGTCGCAGACCGTGAACCAACAGCAAAATACTGGGGTAGCTGGAGGAG
AAGGCACTAGTAGTGCTAAGCAGAAAGGGACAGGTAGGTCGACCCCGACAACAAGGGAAGATTTACGCCATGACACAGCAAGAGGTAGAGGATGCACCAGAAGTTGTTAC
GGGTACACTTTCTATCTGTAG
Protein sequenceShow/hide protein sequence
MSRVASSKKKPLCSTCGKYHLGRCLSGENVCFNCGQGGHFKMECPQLIQEGLIGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGTGRSTPTTREDLRHDTARGRGCTRSCY
GYTFYL