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Tan0008692 (gene) of Snake gourd v1 genome

Gene IDTan0008692
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG02:7870566..7871928
RNA-Seq ExpressionTan0008692
SyntenyTan0008692
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]9.3e-3393.42Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESGKVPFPYR S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]1.6e-3292.11Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MAS+SAH SGVWTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESGKVPFPYR+S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.2e-3394.74Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFEKALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESGKVPFPYR S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

XP_022135728.1 protein RADIALIS-like 1 [Momordica charantia]4.3e-3088.16Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSA+ESG WTAKQNKAFEKALA+YDQDTP+RW+NVAKAIG KTEEEVKRHYQ LVEDVKHIESG VPFPYR S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]1.2e-3293.42Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFE+ALAMYDQD PDRWLNVAKAIGGKTEEEVKRHYQ+LVEDVKHIESGKVPFPYR+S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein7.7e-3392.11Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MAS+SAH SGVWTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESGKVPFPYR+S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

A0A1S3BGF6 protein RADIALIS-like 11.6e-3394.74Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFEKALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESGKVPFPYR S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

A0A5A7SYM4 Protein RADIALIS-like 14.5e-3393.42Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIESGKVPFPYR S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

A0A6J1GJG0 protein RADIALIS-like 15.9e-3393.42Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFE+ALAMYDQD PDRWLNVAKAIGGKTEEEVKRHYQ+LVEDVKHIESGKVPFPYR+S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

A0A6J1IA78 protein RADIALIS-like 15.9e-3393.42Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS
        MASMSAH SGVWTAKQNKAFE+ALAMYDQD PDRWLNVAKAIGGKTEEEVKRHYQ+LVEDVKHIESGKVPFPYR+S
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.1e-2572.37Show/hide
Query:  ASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS
        +SMS+  SG WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G VPFP YR S
Subjt:  ASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS

Q1A173 Protein RADIALIS-like 61.3e-2166.67Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP
        MAS S      WT  QNK FE+ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP

Q58FS3 Transcription factor RADIALIS4.1e-2371.21Show/hide
Query:  WTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS
        W+AK+NKAFE+ALA+YD+DTPDRW NVA+A+ G+T EEVK+HY++LVED+K+IESGKVPFP YR +
Subjt:  WTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS

Q6NNN0 Protein RADIALIS-like 35.9e-2263.64Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS
        MAS S   S  WT K+NK FE+ALA YDQDTPDRW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG+ P P YR++
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS

Q9SIJ5 Protein RADIALIS-like 28.2e-2471.43Show/hide
Query:  SMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP
        SMS++ SG WT KQNKAFE+ALA+YDQDTPDRW NVA+A+GGKT EE KR Y LLV D++ IE+G VPFP
Subjt:  SMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.1e-2265.28Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP
        MAS S   S  WT+KQNK FE+ALA+YD+DTPDRW NVAKA+G K+ EEVKRHY +LVED+ +IE   VP P
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP

AT1G75250.1 RAD-like 69.3e-2366.67Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP
        MAS S      WT  QNK FE+ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP

AT1G75250.2 RAD-like 69.3e-2366.67Show/hide
Query:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP
        MAS S      WT  QNK FE+ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P
Subjt:  MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP

AT2G21650.1 Homeodomain-like superfamily protein5.8e-2571.43Show/hide
Query:  SMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP
        SMS++ SG WT KQNKAFE+ALA+YDQDTPDRW NVA+A+GGKT EE KR Y LLV D++ IE+G VPFP
Subjt:  SMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP

AT4G39250.1 RAD-like 18.1e-2772.37Show/hide
Query:  ASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS
        +SMS+  SG WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G VPFP YR S
Subjt:  ASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFP-YRNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCACGAGTCAGGTGTATGGACAGCAAAGCAAAACAAGGCGTTTGAAAAGGCTTTGGCAATGTATGATCAAGACACACCTGATCGATGGTTGAA
TGTTGCAAAGGCCATTGGTGGAAAAACCGAAGAGGAAGTGAAGAGGCATTACCAACTTCTTGTGGAGGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCCTATC
GAAACTCATGA
mRNA sequenceShow/hide mRNA sequence
GCCTTCTTTTCAAACCCATTAAAGCTTTCATCTGTATTGTCTTGGAGCTGAAATCTCCTTGTCAAATTTAGTATCAGCTAGCAATGGCTTCAATGTCTGCTCACGAGTCA
GGTGTATGGACAGCAAAGCAAAACAAGGCGTTTGAAAAGGCTTTGGCAATGTATGATCAAGACACACCTGATCGATGGTTGAATGTTGCAAAGGCCATTGGTGGAAAAAC
CGAAGAGGAAGTGAAGAGGCATTACCAACTTCTTGTGGAGGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCCTATCGAAACTCATGAGGCAGTTGGTGACACT
AACTAAGGATTGAAAGAGAATGAGAGGCATGAAGGCTCCATTCAGCCATTTCCTGCAAGAATAAAAGAAGAAATTAAAGAGTTATATTTTCTTGCTGTTGTATGTCCCTT
CTAATGCAATTGTAATAATACTAAAAGGAATAAGATTCCTTGTTGTGTTTTCTTTTTAAAAAAACTACCACTCATCTACACTTTTGTCCTTTGAGTATTTATAAGTTATT
ATTAAATCAAAACATCAATGTTGTGATTT
Protein sequenceShow/hide protein sequence
MASMSAHESGVWTAKQNKAFEKALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGKVPFPYRNS