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Tan0008710 (gene) of Snake gourd v1 genome

Gene IDTan0008710
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG01:71475699..71475914
RNA-Seq ExpressionTan0008710
SyntenyTan0008710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]9.1e-1462.9Show/hide
Query:  PKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        PK IR+YFQP   + Q GI++ PIN  NFELK GLIQM RE AFRG   EDP+ HL++FLEI
Subjt:  PKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

XP_017423641.1 PREDICTED: uncharacterized protein LOC108332854 [Vigna angularis]1.2e-1052.11Show/hide
Query:  MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        MADQEL+   K +R+Y  P  NS Q  IV  PI A NFE+K  L+Q++++  F G  +EDPNSHL+NFL I
Subjt:  MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

XP_017428686.1 PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis]2.7e-1050.7Show/hide
Query:  MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        MADQE +   K +R+Y  P  NS Q  IV  PI A NFE+K  L+Q++++  F G  +EDPNSHL+NFL I
Subjt:  MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

XP_022157708.1 uncharacterized protein LOC111024361 [Momordica charantia]1.1e-1160.94Show/hide
Query:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        NN   IR+Y QP F     GI++ PINA N ELK GLIQMVRE  FRG ATEDPN+HL  FL++
Subjt:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

XP_022843226.1 uncharacterized protein LOC111366761 [Olea europaea var. sylvestris]1.6e-1054.69Show/hide
Query:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        N  + IR+Y +PV N   +GI    I AKNFELK GLI MV++  F G A EDPN+HL +FLEI
Subjt:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

TrEMBL top hitse value%identityAlignment
A0A1S3UKD4 uncharacterized protein LOC1067662672.5e-0950Show/hide
Query:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        N  K IR+Y  P  N  Q  IV  PI A NFE+K  L+Q++++  F G  +EDPNSHL+NFL I
Subjt:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

A0A2K3MSV7 Uncharacterized protein (Fragment)1.9e-0950.82Show/hide
Query:  KPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        + +R+YF P  N     IV+ P+ A NFELK GLIQM++   FRG  TEDPN+HL+NF+ +
Subjt:  KPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

A0A6J1DU19 uncharacterized protein LOC1110243615.4e-1260.94Show/hide
Query:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        NN   IR+Y QP F     GI++ PINA N ELK GLIQMVRE  FRG ATEDPN+HL  FL++
Subjt:  NNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

A0A6P6XAQ1 Reverse transcriptase7.2e-0947.89Show/hide
Query:  MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        MA+ E  +N + +R++  P     Q  IV   +NA NFE+K  LIQMV++  + G ATEDPNSHL  FLEI
Subjt:  MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

A0A803PJA6 Uncharacterized protein9.5e-0951.61Show/hide
Query:  PKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI
        P+ +R+Y  PV N    GI +  I A NFELK  LI MV++  F GLAT+DPN HL  FLE+
Subjt:  PKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATCAGGAGCTCATTAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGGCTGGAATAGTCCATGCCCCTATAAATGCTAAAAA
CTTTGAACTGAAAACAGGGCTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCCTAGCCACAGAAGATCCTAACTCTCATCTTCAAAATTTTTTGGAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATCAGGAGCTCATTAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGGCTGGAATAGTCCATGCCCCTATAAATGCTAAAAA
CTTTGAACTGAAAACAGGGCTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCCTAGCCACAGAAGATCCTAACTCTCATCTTCAAAATTTTTTGGAAATCTGA
Protein sequenceShow/hide protein sequence
MADQELINNPKPIREYFQPVFNSEQAGIVHAPINAKNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEI