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Tan0008780 (gene) of Snake gourd v1 genome

Gene IDTan0008780
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGibberellin regulated protein
Genome locationLG01:115842003..115843341
RNA-Seq ExpressionTan0008780
SyntenyTan0008780
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591269.1 Snakin-2, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2769.23Show/hide
Query:  LLISLLVFIIYLTSSVSLLYS-----LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        +L+    F++ + S+  ++ +     LP +I CGE+CDARCQLSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  LLISLLVFIIYLTSSVSLLYS-----LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

XP_008466485.1 PREDICTED: gibberellin-regulated protein 1-like [Cucumis melo]2.2e-2668.09Show/hide
Query:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        L  ++ L+ F + L  S  ++ +      LP +I CG+ACDARC+LSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

XP_022937106.1 gibberellin-regulated protein 1-like [Cucurbita moschata]3.3e-2769.15Show/hide
Query:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        +F ++ +    + LT S  ++ +      LP +I CGEACDARCQLSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

XP_022975660.1 snakin-2-like [Cucurbita maxima]9.7e-2770.53Show/hide
Query:  FANLLYSLFLLISLLVFIIYLTSSVSLLYSLP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        FA LL S   ++ +    + +T+ V     LP +I CGE CDARCQLSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  FANLLYSLFLLISLLVFIIYLTSSVSLLYSLP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

XP_023535343.1 gibberellin-regulated protein 11-like [Cucurbita pepo subsp. pepo]1.3e-2671.58Show/hide
Query:  FANLLYSLFLLISLLVFIIYLTSSVSLLYSLP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        FA LL +   +  LLV    +  +  +   LP +I CGEACDARCQLSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  FANLLYSLFLLISLLVFIIYLTSSVSLLYSLP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LGH8 Gibberellin-regulated protein 16.8e-2665.96Show/hide
Query:  LFLLISLLVFIIYLTSSVSLLYS------LPK-IHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        L  ++ L+ F + L  S  ++ +      LP+ I CGEACDARC+LSSRQKIC+RACGTCC+ CQCVPPGTSGNYD CPCYANMTTHGGRHKCP
Subjt:  LFLLISLLVFIIYLTSSVSLLYS------LPK-IHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

A0A1S3CRE3 gibberellin-regulated protein 1-like1.0e-2668.09Show/hide
Query:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        L  ++ L+ F + L  S  ++ +      LP +I CG+ACDARC+LSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

A0A5A7V5C1 Gibberellin-regulated protein 1-like1.0e-2668.09Show/hide
Query:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        L  ++ L+ F + L  S  ++ +      LP +I CG+ACDARC+LSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

A0A6J1F9F4 gibberellin-regulated protein 1-like1.6e-2769.15Show/hide
Query:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        +F ++ +    + LT S  ++ +      LP +I CGEACDARCQLSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  LFLLISLLVFIIYLTSSVSLLYS------LP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

A0A6J1IHC1 snakin-2-like4.7e-2770.53Show/hide
Query:  FANLLYSLFLLISLLVFIIYLTSSVSLLYSLP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        FA LL S   ++ +    + +T+ V     LP +I CGE CDARCQLSSRQKICKRACGTCCA CQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
Subjt:  FANLLYSLFLLISLLVFIIYLTSSVSLLYSLP-KIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 112.0e-2260Show/hide
Query:  LLISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        LLISLLV + ++ + +      PKI C   C  RC LSSR  +C RACGTCCA C CV PGTSGNYD CPCY ++TTHGGR KCP
Subjt:  LLISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

P46688 Gibberellin-regulated protein 28.5e-1846.88Show/hide
Query:  FANLLYSLFLLISLLVFIIYL--TSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        F + L  L +++ L  + +++       +   + KI CG  C  RC  SSR K+C RAC +CC+ C CVPPGTSGN  +CPCYA++TTHGGR KCP
Subjt:  FANLLYSLFLLISLLVFIIYL--TSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

P46689 Gibberellin-regulated protein 18.2e-2159.09Show/hide
Query:  LLISLLVFIIY---LTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        LLISLLV  +    + +S        KI CG AC ARC+LS R ++C RACGTCC  C CVPPGT GNYD C CYA++TTHGGR KCP
Subjt:  LLISLLVFIIY---LTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

Q8GWK5 Gibberellin-regulated protein 94.8e-2165.08Show/hide
Query:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        P+I+CG AC  RC  +SR+K+C RACG+CCA CQCVPPGTSGN   CPCYA++ THG + KCP
Subjt:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

Q93X17 Snakin-22.6e-2256.7Show/hide
Query:  FANLLYSLFLL---ISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        FA+LL SL LL    S+    +   +     YS  KI CG AC ARC+LSSR ++C RACGTCCA C CVPPGTSGN + CPCYA++TTHG + KCP
Subjt:  FANLLYSLFLL---ISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

Arabidopsis top hitse value%identityAlignment
AT1G22690.1 Gibberellin-regulated family protein3.4e-2265.08Show/hide
Query:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        P+I+CG AC  RC  +SR+K+C RACG+CCA CQCVPPGTSGN   CPCYA++ THG + KCP
Subjt:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

AT1G22690.2 Gibberellin-regulated family protein3.4e-2265.08Show/hide
Query:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        P+I+CG AC  RC  +SR+K+C RACG+CCA CQCVPPGTSGN   CPCYA++ THG + KCP
Subjt:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

AT1G22690.3 Gibberellin-regulated family protein3.4e-2265.08Show/hide
Query:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        P+I+CG AC  RC  +SR+K+C RACG+CCA CQCVPPGTSGN   CPCYA++ THG + KCP
Subjt:  PKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

AT1G75750.2 GAST1 protein homolog 13.4e-2259.77Show/hide
Query:  LLISLLVFIIYLTSSVSLLYS--LPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        LLISLLV  +      S   +    KI CG AC ARC+LS R ++C RACGTCC  C CVPPGT GNYD C CYA++TTHGGR KCP
Subjt:  LLISLLVFIIYLTSSVSLLYS--LPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP

AT2G18420.1 Gibberellin-regulated family protein1.4e-2360Show/hide
Query:  LLISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP
        LLISLLV + ++ + +      PKI C   C  RC LSSR  +C RACGTCCA C CV PGTSGNYD CPCY ++TTHGGR KCP
Subjt:  LLISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTGCCAATTTATTATATTCATTATTTCTTTTGATAAGCTTGCTTGTCTTTATTATTTACCTAACTTCCTCGGTTTCTTTACTTTATTCCCTTCCTAAAATTCA
TTGCGGCGAAGCTTGTGATGCGAGGTGCCAATTATCATCGAGGCAGAAGATCTGCAAGAGGGCATGTGGTACCTGCTGTGCTCACTGTCAATGCGTTCCACCGGGCACTT
CAGGCAACTACGATGTTTGTCCCTGCTATGCTAACATGACCACGCATGGTGGCAGACACAAGTGTCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTGCCAATTTATTATATTCATTATTTCTTTTGATAAGCTTGCTTGTCTTTATTATTTACCTAACTTCCTCGGTTTCTTTACTTTATTCCCTTCCTAAAATTCA
TTGCGGCGAAGCTTGTGATGCGAGGTGCCAATTATCATCGAGGCAGAAGATCTGCAAGAGGGCATGTGGTACCTGCTGTGCTCACTGTCAATGCGTTCCACCGGGCACTT
CAGGCAACTACGATGTTTGTCCCTGCTATGCTAACATGACCACGCATGGTGGCAGACACAAGTGTCCCTAG
Protein sequenceShow/hide protein sequence
MSFANLLYSLFLLISLLVFIIYLTSSVSLLYSLPKIHCGEACDARCQLSSRQKICKRACGTCCAHCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP