CuGenDBv2

Gene ID	Tan0008781
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Integrase catalytic domain-containing protein
Genome location	LG06:65713756..65716103
RNA-Seq Expression	Tan0008781
Synteny	Tan0008781
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]

5.7e-51

44.55

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Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHLLG--------------TNTS-----------------
        MANA    +  SL S G   FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G              +NT+                 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHLLG--------------TNTS-----------------

Query:  ---INPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRK-------------------GQAGSPVSTR
           +N L+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                   GQ GSPV  R
Subjt:  ---INPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRK-------------------GQAGSPVSTR

Query:  SLISQVLLGLDEEYNPVVVGIQGKYEISWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPN---NYNRSHNNNSSRGGT
        +LISQVLLGLDE YN V+V IQGK +ISW D Q+ LL+FEK L+ QNTQ+       N + + A+N   +     Q+N+S      YNR H +       
Subjt:  SLISQVLLGLDEEYNPVVVGIQGKYEISWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPN---NYNRSHNNNSSRGGT

Query:  PNSRGRGRGRGYNSNNRPICQ
                G+  N NN P CQ
Subjt:  PNSRGRGRGRGYNSNNRPICQ

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]

2.9e-47

44.67

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Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-
        MANA    +  SL S G   FS+PPLNQ+LNQ+TT+KL+R N+LLWK LALPIL++YKLE HL                             +G ++SI 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-

Query:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV
            NPL+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                  GLDE YN V+V
Subjt:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV

Query:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ
         IQGK +ISW D Q+ LL+FEKRL+ QNTQ +N+ + + + ++NMA       QR  Q N     YNR H +               G+  N NN P CQ
Subjt:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]

2.9e-47

44.67

Show/hide

Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-
        MANA    +  SL S G   FS+PPLNQ+LNQ+TT+KL+R N+LLWK LALPIL++YKLE HL                             +G ++SI 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-

Query:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV
            NPL+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                  GLDE YN V+V
Subjt:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV

Query:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ
         IQGK +ISW D Q+ LL+FEKRL+ QNTQ +N+ + + + ++NMA       QR  Q N     YNR H +               G+  N NN P CQ
Subjt:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ

XP_016902205.1 PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]

2.9e-47

44.67

Show/hide

Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-
        MANA    +  SL S G   FS+PPLNQ+LNQ+TT+KL+R N+LLWK LALPIL++YKLE HL                             +G ++SI 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-

Query:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV
            NPL+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                  GLDE YN V+V
Subjt:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV

Query:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ
         IQGK +ISW D Q+ LL+FEKRL+ QNTQ +N+ + + + ++NMA       QR  Q N     YNR H +               G+  N NN P CQ
Subjt:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]

4.0e-57

47.87

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Query:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKL-----------ESHLLGTNT--------------SINPLYEAWMTVDQLLIGWLYNSMTSE
        F+SPPLNQLLNQ+T+IK++RGNFLLW+NLALPILR+YKL            +HL+ T+T              ++NP YEAW+ VD+LL+GWLYNSM ++
Subjt:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKL-----------ESHLLGTNT--------------SINPLYEAWMTVDQLLIGWLYNSMTSE

Query:  VATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQ-------------------AGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEISW
        VA QVMG +T+++LW A+Q LFGVQSRAE DYL+Q FQQ+ KG                    AGS VS R L+SQVL GLDEEYNP+VV +QGK  +SW
Subjt:  VATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQ-------------------AGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEISW

Query:  ADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRG-----GTPNSRGRGRG
        ++   +LL +EKRLE+QN+ ++ +  +   + ++    G    R  Q N   NN N SH +N+ RG     G+   R RGRG
Subjt:  ADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRG-----GTPNSRGRGRG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X1

1.4e-47

44.67

Show/hide

Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-
        MANA    +  SL S G   FS+PPLNQ+LNQ+TT+KL+R N+LLWK LALPIL++YKLE HL                             +G ++SI 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-

Query:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV
            NPL+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                  GLDE YN V+V
Subjt:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV

Query:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ
         IQGK +ISW D Q+ LL+FEKRL+ QNTQ +N+ + + + ++NMA       QR  Q N     YNR H +               G+  N NN P CQ
Subjt:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X4

1.4e-47

44.67

Show/hide

Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-
        MANA    +  SL S G   FS+PPLNQ+LNQ+TT+KL+R N+LLWK LALPIL++YKLE HL                             +G ++SI 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-

Query:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV
            NPL+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                  GLDE YN V+V
Subjt:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV

Query:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ
         IQGK +ISW D Q+ LL+FEKRL+ QNTQ +N+ + + + ++NMA       QR  Q N     YNR H +               G+  N NN P CQ
Subjt:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ

A0A1S4E1V2 uncharacterized protein LOC107991581 isoform X3

1.4e-47

44.67

Show/hide

Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-
        MANA    +  SL S G   FS+PPLNQ+LNQ+TT+KL+R N+LLWK LALPIL++YKLE HL                             +G ++SI 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHL-----------------------------LGTNTSI-

Query:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV
            NPL+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                  GLDE YN V+V
Subjt:  ----NPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVV

Query:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ
         IQGK +ISW D Q+ LL+FEKRL+ QNTQ +N+ + + + ++NMA       QR  Q N     YNR H +               G+  N NN P CQ
Subjt:  GIQGKYEISWADAQNDLLMFEKRLEFQNTQ-RNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQ

A0A5A7SIT7 Uncharacterized protein

2.7e-51

44.55

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Query:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHLLG--------------TNTS-----------------
        MANA    +  SL S G   FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G              +NT+                 
Subjt:  MANALLNES--SLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHLLG--------------TNTS-----------------

Query:  ---INPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRK-------------------GQAGSPVSTR
           +N L+E W+T D LL+GWLYNSMT +VA Q+MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RK                   GQ GSPV  R
Subjt:  ---INPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRK-------------------GQAGSPVSTR

Query:  SLISQVLLGLDEEYNPVVVGIQGKYEISWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPN---NYNRSHNNNSSRGGT
        +LISQVLLGLDE YN V+V IQGK +ISW D Q+ LL+FEK L+ QNTQ+       N + + A+N   +     Q+N+S      YNR H +       
Subjt:  SLISQVLLGLDEEYNPVVVGIQGKYEISWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPN---NYNRSHNNNSSRGGT

Query:  PNSRGRGRGRGYNSNNRPICQ
                G+  N NN P CQ
Subjt:  PNSRGRGRGRGYNSNNRPICQ

A0A6J1DCW4 uncharacterized protein LOC111019598

2.0e-57

47.87

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Query:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKL-----------ESHLLGTNT--------------SINPLYEAWMTVDQLLIGWLYNSMTSE
        F+SPPLNQLLNQ+T+IK++RGNFLLW+NLALPILR+YKL            +HL+ T+T              ++NP YEAW+ VD+LL+GWLYNSM ++
Subjt:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKL-----------ESHLLGTNT--------------SINPLYEAWMTVDQLLIGWLYNSMTSE

Query:  VATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQ-------------------AGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEISW
        VA QVMG +T+++LW A+Q LFGVQSRAE DYL+Q FQQ+ KG                    AGS VS R L+SQVL GLDEEYNP+VV +QGK  +SW
Subjt:  VATQVMGCNTTKDLWDAIQLLFGVQSRAEEDYLRQTFQQSRKGQ-------------------AGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEISW

Query:  ADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRG-----GTPNSRGRGRG
        ++   +LL +EKRLE+QN+ ++ +  +   + ++    G    R  Q N   NN N SH +N+ RG     G+   R RGRG
Subjt:  ADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSHNNNSSRG-----GTPNSRGRGRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.6e-11

27.78

Show/hide

Query:  TIKLERGNFLLWKNLALPILRNYKLESHLLGTNTSINPLYEAWMTVDQLLIGWLYNSMTSEVATQV--MGCNTTKDLWDAIQLLFGVQSRAE----EDYL
        T+ L + N+ +W+ L   +  ++ +  H+ G++T      + W   D L+  W+Y ++T  +   +  +GC T +DLW +++ LF     A     E+ L
Subjt:  TIKLERGNFLLWKNLALPILRNYKLESHLLGTNTSINPLYEAWMTVDQLLIGWLYNSMTSEVATQV--MGCNTTKDLWDAIQLLFGVQSRAE----EDYL

Query:  RQT---------FQQSRKG------QAGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEI-SWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAI
        R T         + Q  K          SP+S R L+  +L GL E+Y+ ++  I+ K    S+ +A++ LLM E RL   N  ++S+S +++ S++  +
Subjt:  RQT---------FQQSRKG------QAGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEI-SWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAI

Query:  NRGTQSQRQQQQNYSPNNYNRSHNNNSSRG-GTPNSRGRGRGRG---YNSNN
            + Q +  Q Y        HNNNS+ G G    + RG G     YN+NN
Subjt:  NRGTQSQRQQQQNYSPNNYNRSHNNNSSRG-GTPNSRGRGRGRG---YNSNN

Sequences

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CDS sequence

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ATGGCCAACGCCTTATTGAATGAATCTTCGTTGTTCTCTACTGGGGCACCTCATTTTAGCAGTCCACCGCTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGA
AAGAGGGAATTTCCTTCTGTGGAAAAATTTAGCATTACCAATCCTTCGTAACTACAAACTCGAGAGTCATCTCCTGGGAACCAATACATCAATCAATCCGCTCTATGAAG
CATGGATGACAGTTGATCAGCTGCTGATCGGTTGGCTATATAATTCAATGACTTCAGAAGTCGCTACACAGGTTATGGGGTGCAACACGACCAAAGACCTGTGGGATGCT
ATTCAGCTCTTATTTGGAGTACAATCACGAGCAGAGGAAGATTACCTGCGTCAAACATTTCAACAATCACGCAAAGGGCAAGCTGGAAGCCCTGTTTCCACTCGATCGTT
GATTTCACAGGTTTTACTTGGACTTGATGAAGAATACAACCCAGTTGTGGTTGGCATTCAAGGTAAATATGAGATATCATGGGCAGATGCTCAAAACGACCTTCTTATGT
TTGAAAAGCGACTGGAGTTTCAGAATACTCAACGAAACAGTGTGTCCTTCAGTCACAATGCCTCAGTCAATATGGCAATAAACAGAGGAACACAATCGCAGAGGCAACAA
CAACAAAATTACTCTCCAAACAATTACAATCGGTCACACAACAACAATAGTTCACGAGGAGGAACCCCAAATTCCAGAGGACGTGGCCGAGGTAGAGGGTACAACTCTAA
CAATCGTCCAATATGTCAGGGTGTTTGGGTGTGCTTGCTTTCCAAACTTACGACCCTATCAGAGGCACAAGTTTGA

mRNA sequence

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Protein sequence

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MANALLNESSLFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRNYKLESHLLGTNTSINPLYEAWMTVDQLLIGWLYNSMTSEVATQVMGCNTTKDLWDA
IQLLFGVQSRAEEDYLRQTFQQSRKGQAGSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEISWADAQNDLLMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQ
QQNYSPNNYNRSHNNNSSRGGTPNSRGRGRGRGYNSNNRPICQGVWVCLLSKLTTLSEAQV

Tan0008781 (gene) of Snake gourd v1 genome