; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008785 (gene) of Snake gourd v1 genome

Gene IDTan0008785
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy1-copia retrotransposon protein
Genome locationLG10:63362492..63362827
RNA-Seq ExpressionTan0008785
SyntenyTan0008785
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055836.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-2659.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-2659.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-2659.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-2659.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

TYK07981.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-2659.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

TrEMBL top hitse value%identityAlignment
A0A5A7SKK3 Ty1-copia retrotransposon protein9.2e-2759.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

A0A5A7UNH1 Ty1-copia retrotransposon protein9.2e-2759.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

A0A5D3C5T2 Ty1-copia retrotransposon protein9.2e-2759.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

A0A5D3C7Z8 Ty1-copia retrotransposon protein9.2e-2759.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

A0A5D3DL36 Ty1-copia retrotransposon protein9.2e-2759.02Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH
        MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            +  D  + T P+  VA TD      + DPE + KDNKTV GH
Subjt:  MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGH

Query:  LLNRMTDSLFDMFVIQKSTKVI
        LLN M+D +FD+FV+QKS K I
Subjt:  LLNRMTDSLFDMFVIQKSTKVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATT
GAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTA
CCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTC
ATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATT
GAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTA
CCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTC
ATCTAG
Protein sequenceShow/hide protein sequence
MSIKSGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKYSDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTKV
I