CuGenDBv2

Gene ID	Tan0008863
Organism	Trichosanthes anguina (Snake gourd v1)
Description	classical arabinogalactan protein 1-like
Genome location	LG01:5041912..5042582
RNA-Seq Expression	Tan0008863
Synteny	Tan0008863
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0031225 - anchored component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-28

81.36

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MAIR FVV+++VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N 
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYA
        AASISFS+FGSVA VLYA
Subjt:  AASISFSVFGSVAVVLYA

KGN53727.1 hypothetical protein Csa_015026 [Cucumis sativus]

5.7e-29

78.15

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASI
        MAI S V +I V+  I SA AQSP+ASPSLSP+KSPS +P   SPKSSPA APTP+SLKSPPSPP++SPSTSPSPASSP+SISSPPADAPAPS NGAASI
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASI

Query:  SFSVFGSVAVVLYAAVLMI
        +FSVFGSVAV LYA VLMI
Subjt:  SFSVFGSVAVVLYAAVLMI

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

3.4e-29

81.3

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MAIR FVV++ VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N 
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYAAVLMI
        AASISFS+FGSVA VLYA VLMI
Subjt:  AASISFSVFGSVAVVLYAAVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

1.2e-29

79.67

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MAIR FVV+++VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP SL+SPPSPPAASPS SPSP+ SPSSISSPPADAPAPS N 
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYAAVLMI
        AASIS S+FGSVA VLYA VLMI
Subjt:  AASISFSVFGSVAVVLYAAVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

1.2e-29

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSA--SPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSP----SPASSPSSISSPPADAPAPSD
        MAIRSFV +ILVA+ IGSAIAQSP A  SPS SPSK+PS SP VKSPKSSPAAAPTP+SLKSPPSPP+ SP+TSP    SPA+SPS ISSPPADAPAPS 
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSA--SPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSP----SPASSPSSISSPPADAPAPSD

Query:  NGAASISFSVFGSVAVVLYAAVLMI
        NGAASISFSVFGSVAVVLY  VL+I
Subjt:  NGAASISFSVFGSVAVVLYAAVLMI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

2.8e-29

78.15

Show/hide

Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASI
        MAI S V +I V+  I SA AQSP+ASPSLSP+KSPS +P   SPKSSPA APTP+SLKSPPSPP++SPSTSPSPASSP+SISSPPADAPAPS NGAASI
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASI

Query:  SFSVFGSVAVVLYAAVLMI
        +FSVFGSVAV LYA VLMI
Subjt:  SFSVFGSVAVVLYAAVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like

3.8e-26

78.05

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MAIRSFVV+ILVA+ IGSAIAQSP+ASPSL    SPSK+PS SP VKSPKSSPAA   PT        PA+SPSTSPSPA+SPSSISSPPADAPAPS +G
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYAAVLMI
        AASISFSVFGSVAVVLYA VLMI
Subjt:  AASISFSVFGSVAVVLYAAVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like

1.6e-29

81.3

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MAIR FVV++ VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTP SLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N 
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYAAVLMI
        AASISFS+FGSVA VLYA VLMI
Subjt:  AASISFSVFGSVAVVLYAAVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like

1.7e-26

78.86

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPS----VSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MAIRSFVV+ILVA+ IGSAIAQSP+ASPSLSP KSPS     SP VKSPKSSPAA   PT        PA+SPSTSPSPA+SPSSISSPPADAPAPS NG
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPS----VSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYAAVLMI
        AASISFSVFGSVAVVLYA VLMI
Subjt:  AASISFSVFGSVAVVLYAAVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like

1.2e-27

78.86

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Query:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG
        MA R FVV++ VAM I SAIAQSPSASPSL    SPSK+PS+SP V+SPKSSPAAAPTPTSLKSPPSPPAASPS SPSP  SPSSISSPPADAPAPS N 
Subjt:  MAIRSFVVIILVAMSIGSAIAQSPSASPSL----SPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNG

Query:  AASISFSVFGSVAVVLYAAVLMI
        AASIS S+FGSVA VL+A V MI
Subjt:  AASISFSVFGSVAVVLYAAVLMI

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

4.3e-11

50.39

Show/hide

Query:  RSFVVIILVAMSIGSAIAQSPSASPS------LSPSKSPS-----VSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAP
        +S V ++L A+ I SA+AQSP+ +PS      +SP+ SP         P  SP  SPAAA TP S  SPPSPP A   T+ SPA SPS+IS  P +AP P
Subjt:  RSFVVIILVAMSIGSAIAQSPSASPS------LSPSKSPS-----VSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAP

Query:  SDNGAASISFSVFGSVAVVLYAAVLMI
        +  GA S  F+ FGSVAV+L AAVL+I
Subjt:  SDNGAASISFSVFGSVAVVLYAAVLMI

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

3.1e-12

50.39

Show/hide

Query:  RSFVVIILVAMSIGSAIAQSPSASPS------LSPSKSPS-----VSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAP
        +S V ++L A+ I SA+AQSP+ +PS      +SP+ SP         P  SP  SPAAA TP S  SPPSPP A   T+ SPA SPS+IS  P +AP P
Subjt:  RSFVVIILVAMSIGSAIAQSPSASPS------LSPSKSPS-----VSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAP

Query:  SDNGAASISFSVFGSVAVVLYAAVLMI
        +  GA S  F+ FGSVAV+L AAVL+I
Subjt:  SDNGAASISFSVFGSVAVVLYAAVLMI

Sequences

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CDS sequence

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ATGGCGATTAGAAGTTTTGTAGTGATAATTTTGGTGGCGATGTCGATCGGCTCTGCAATCGCGCAATCTCCGTCGGCATCTCCGTCATTGTCTCCGAGCAAATCGCCGTC
GGTTTCTCCGCCTGTCAAGTCGCCGAAATCCTCTCCGGCTGCGGCGCCTACTCCGACCTCTCTGAAGTCTCCGCCATCTCCTCCGGCTGCTTCTCCGTCTACTTCTCCAT
CTCCGGCGTCTTCTCCTTCCTCGATCTCGTCTCCGCCGGCTGACGCTCCGGCTCCGTCTGATAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTT
GTGCTATACGCCGCCGTTTTGATGATCTGA

mRNA sequence

Show/hide mRNA sequence

CTTCTCTCTCTTCATTTCTTCATCTTCCTCACCTTCTCTCTCTAGATTCTTCGTTTTTCTTTTGGTAAATTTTTTGATTTACAGAAATGGCGATTAGAAGTTTTGTAGTG
ATAATTTTGGTGGCGATGTCGATCGGCTCTGCAATCGCGCAATCTCCGTCGGCATCTCCGTCATTGTCTCCGAGCAAATCGCCGTCGGTTTCTCCGCCTGTCAAGTCGCC
GAAATCCTCTCCGGCTGCGGCGCCTACTCCGACCTCTCTGAAGTCTCCGCCATCTCCTCCGGCTGCTTCTCCGTCTACTTCTCCATCTCCGGCGTCTTCTCCTTCCTCGA
TCTCGTCTCCGCCGGCTGACGCTCCGGCTCCGTCTGATAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCGCCGTTTTGATG
ATCTGAGAGCAATTTGATTTGATTAGTCTCTGTTCTCTCTCTCTGAGTGATTTATTTGTAGTAGATTTCTGAGTACATTTTATTTTGTTACTTTCACAGTTTCTGATGGA
TTCTATACTTTTTTTTCTTTCTCTGATTTAATTTGTTTCATTGTTTCTTAGTTATGGCGATGATGTGTTTGTTGTTAACGGAGCTCTTCTGTATCTGATTCTTATCATAT
ATTAATTTATA

Protein sequence

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MAIRSFVVIILVAMSIGSAIAQSPSASPSLSPSKSPSVSPPVKSPKSSPAAAPTPTSLKSPPSPPAASPSTSPSPASSPSSISSPPADAPAPSDNGAASISFSVFGSVAV
VLYAAVLMI

Tan0008863 (gene) of Snake gourd v1 genome