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Tan0008865 (gene) of Snake gourd v1 genome

Gene IDTan0008865
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationLG10:49472772..49477424
RNA-Seq ExpressionTan0008865
SyntenyTan0008865
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34152.1 hypothetical protein [Cucumis melo subsp. melo]1.8e-1351.11Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD
        M+GLSLGVD+ +SQ+EI+YRH  +T SG++RFM   I N Q MN MFSIA+  PN+VHLYV V  +D  +N+    K   ++VD +P  D
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD

KAA0036768.1 uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]2.1e-1452.22Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD
        M+GLSLGVD+ +SQ+EI+YRH  +T SG++RFMP  I N Q MN MFSIA+S PN+VHLYV V  +D  +N+    +   ++VD  P  D
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD

KAA0041167.1 uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]4.3e-3657.69Show/hide
Query:  MGDKCLGFVLHTNGFMFDGVDGVDYDQPACGGFSLNVNSGVAFEQFVEMIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMS
        M DK LGF+L  NG M DG DG+DYDQPACGGF+++VNSG+ FEQF+E++G S+G+D+R S +EI+YRH ++T SG IRFMP  IPN Q M  MFSIAM 
Subjt:  MGDKCLGFVLHTNGFMFDGVDGVDYDQPACGGFSLNVNSGVAFEQFVEMIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMS

Query:  VPNLVHLYVNVRRMDMNVQNPEKTPSQFVD
        + N+VHLYVNV R+ +++    K+  Q  D
Subjt:  VPNLVHLYVNVRRMDMNVQNPEKTPSQFVD

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]7.9e-1451.11Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD
        M+GLSLGVD+ +SQ+EI+YRH  +T SG++RFMP  I N Q MN MFSIA+  PN+VHLYV V  +D  +N+    +   ++VD  P  D
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD

TYJ98387.1 hypothetical protein E5676_scaffold232G001340 [Cucumis melo var. makuwa]4.6e-1448.08Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMDMNVQ-NPEKTPSQFVDPNPSVDLSQCVDSDPDS
        M+GLS+GVD+ +SQ+EI+YRH  +T SG++RFMP  I N Q MN MFSIA+  PN+VHLYV V  +D+ +  N E T            + + VD DP+S
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMDMNVQ-NPEKTPSQFVDPNPSVDLSQCVDSDPDS

Query:  VSPP
         +PP
Subjt:  VSPP

TrEMBL top hitse value%identityAlignment
A0A5A7T1X8 SWIM-type domain-containing protein1.0e-1452.22Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD
        M+GLSLGVD+ +SQ+EI+YRH  +T SG++RFMP  I N Q MN MFSIA+S PN+VHLYV V  +D  +N+    +   ++VD  P  D
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD

A0A5A7THR5 Uncharacterized protein2.1e-3657.69Show/hide
Query:  MGDKCLGFVLHTNGFMFDGVDGVDYDQPACGGFSLNVNSGVAFEQFVEMIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMS
        M DK LGF+L  NG M DG DG+DYDQPACGGF+++VNSG+ FEQF+E++G S+G+D+R S +EI+YRH ++T SG IRFMP  IPN Q M  MFSIAM 
Subjt:  MGDKCLGFVLHTNGFMFDGVDGVDYDQPACGGFSLNVNSGVAFEQFVEMIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMS

Query:  VPNLVHLYVNVRRMDMNVQNPEKTPSQFVD
        + N+VHLYVNV R+ +++    K+  Q  D
Subjt:  VPNLVHLYVNVRRMDMNVQNPEKTPSQFVD

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein3.8e-1451.11Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD
        M+GLSLGVD+ +SQ+EI+YRH  +T SG++RFMP  I N Q MN MFSIA+  PN+VHLYV V  +D  +N+    +   ++VD  P  D
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD

A0A5D3BFY6 Uncharacterized protein8.5e-1451.11Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD
        M+GLSLGVD+ +SQ+EI+YRH  +T SG++RFM   I N Q MN MFSIA+  PN+VHLYV V  +D  +N+    K   ++VD +P  D
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMD--MNVQNPEKTPSQFVDPNPSVD

A0A5D3BGY9 Uncharacterized protein2.2e-1448.08Show/hide
Query:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMDMNVQ-NPEKTPSQFVDPNPSVDLSQCVDSDPDS
        M+GLS+GVD+ +SQ+EI+YRH  +T SG++RFMP  I N Q MN MFSIA+  PN+VHLYV V  +D+ +  N E T            + + VD DP+S
Subjt:  MIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVNVRRMDMNVQ-NPEKTPSQFVDPNPSVDLSQCVDSDPDS

Query:  VSPP
         +PP
Subjt:  VSPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATAAATGTCTGGGATTTGTTTTGCATACAAATGGTTTTATGTTCGATGGGGTAGATGGAGTTGATTATGACCAACCAGCATGTGGAGGGTTTTCTTTGAATGT
TAATAGTGGAGTCGCGTTTGAACAGTTTGTTGAAATGATTGGGTTATCACTAGGGGTAGATGTAAGGACAAGTCAGTTGGAGATAGTTTATAGACACCTCGAAGTAACAC
TATCAGGATCAATAAGGTTTATGCCAATATCAATCCCTAACTATCAAACGATGAACCTAATGTTCTCAATTGCGATGTCAGTTCCAAATTTAGTGCATTTATATGTCAAT
GTTAGAAGAATGGATATGAATGTACAAAACCCCGAAAAAACTCCTAGCCAGTTTGTTGACCCCAACCCATCTGTTGACCTTAGCCAATGTGTTGACTCCGATCCTGATTC
AGTTTCTCCACCATATGCTCCACCAATTGATGCCTACGGGGATACAACTCCAGACTATTCAAATTGGTATAACAATATCACCAGGCGTTACATCACTCATGAGGGAGCAT
CATATGGAAATGCGATTCTTCGTCTATGTGATCATGGAGAAAACAATTTGGATCAACTACATAATATGTACAGCATTCCTATTGCTCCTCCTCCTGGTCCTAGACATAGA
CGACGCGTTCAACAAGATGACATTGGAGGAGAGGAGCACTTGCCTGCACTTCAATATATTTCAACTTCGATGATGATGATACCCACACCAGGAATACAAGATTCTGAGGC
AGGTCCCTCATCATCACAAGGTCGCGTACGTGGACGAGATGATGATGATCAAGATGAAGAATCAGATGAACTGCTCCAACCTGATCAAGCTCCAAGAGGACGTCGTCGAC
AACCTCCTCGTAATAGACGATGTCCACCATGTGGCAAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATAAATGTCTGGGATTTGTTTTGCATACAAATGGTTTTATGTTCGATGGGGTAGATGGAGTTGATTATGACCAACCAGCATGTGGAGGGTTTTCTTTGAATGT
TAATAGTGGAGTCGCGTTTGAACAGTTTGTTGAAATGATTGGGTTATCACTAGGGGTAGATGTAAGGACAAGTCAGTTGGAGATAGTTTATAGACACCTCGAAGTAACAC
TATCAGGATCAATAAGGTTTATGCCAATATCAATCCCTAACTATCAAACGATGAACCTAATGTTCTCAATTGCGATGTCAGTTCCAAATTTAGTGCATTTATATGTCAAT
GTTAGAAGAATGGATATGAATGTACAAAACCCCGAAAAAACTCCTAGCCAGTTTGTTGACCCCAACCCATCTGTTGACCTTAGCCAATGTGTTGACTCCGATCCTGATTC
AGTTTCTCCACCATATGCTCCACCAATTGATGCCTACGGGGATACAACTCCAGACTATTCAAATTGGTATAACAATATCACCAGGCGTTACATCACTCATGAGGGAGCAT
CATATGGAAATGCGATTCTTCGTCTATGTGATCATGGAGAAAACAATTTGGATCAACTACATAATATGTACAGCATTCCTATTGCTCCTCCTCCTGGTCCTAGACATAGA
CGACGCGTTCAACAAGATGACATTGGAGGAGAGGAGCACTTGCCTGCACTTCAATATATTTCAACTTCGATGATGATGATACCCACACCAGGAATACAAGATTCTGAGGC
AGGTCCCTCATCATCACAAGGTCGCGTACGTGGACGAGATGATGATGATCAAGATGAAGAATCAGATGAACTGCTCCAACCTGATCAAGCTCCAAGAGGACGTCGTCGAC
AACCTCCTCGTAATAGACGATGTCCACCATGTGGCAAACATTGA
Protein sequenceShow/hide protein sequence
MGDKCLGFVLHTNGFMFDGVDGVDYDQPACGGFSLNVNSGVAFEQFVEMIGLSLGVDVRTSQLEIVYRHLEVTLSGSIRFMPISIPNYQTMNLMFSIAMSVPNLVHLYVN
VRRMDMNVQNPEKTPSQFVDPNPSVDLSQCVDSDPDSVSPPYAPPIDAYGDTTPDYSNWYNNITRRYITHEGASYGNAILRLCDHGENNLDQLHNMYSIPIAPPPGPRHR
RRVQQDDIGGEEHLPALQYISTSMMMIPTPGIQDSEAGPSSSQGRVRGRDDDDQDEESDELLQPDQAPRGRRRQPPRNRRCPPCGKH