; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008872 (gene) of Snake gourd v1 genome

Gene IDTan0008872
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationLG05:2007196..2008141
RNA-Seq ExpressionTan0008872
SyntenyTan0008872
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605540.1 Syntaxin-71, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3690.1Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+TGLV GGSSGG NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVF G   
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  S
        S
Subjt:  S

XP_004149541.1 protein transport protein Sec61 subunit beta [Cucumis sativus]9.9e-3485.58Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGK
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTS + STGLVGGGSSGG NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF GK
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGK

Query:  VESA
        +  A
Subjt:  VESA

XP_022140347.1 protein transport protein Sec61 subunit beta [Momordica charantia]2.4e-3585.71Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRR+ ST +AGS G+VG GSSGG NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF GK+ 
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  SAHEG
         A  G
Subjt:  SAHEG

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]1.6e-3690.2Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+TGLV GGSSGG NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVF GK+ 
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  SA
         A
Subjt:  SA

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]3.7e-3690.2Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARG SQSQS SSSTSRPGVVAPRGSAAATAGLRRRR GSTS A STGLVGGGSSGG NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF GK+ 
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  SA
         A
Subjt:  SA

TrEMBL top hitse value%identityAlignment
A0A0A0KHR1 Protein transport protein Sec61 subunit beta4.8e-3485.58Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGK
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTS + STGLVGGGSSGG NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF GK
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGK

Query:  VESA
        +  A
Subjt:  VESA

A0A5D3CTD4 Protein transport protein Sec61 subunit beta6.3e-3485.58Show/hide
Query:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGK
        MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTS   STGLVGGGSSGG NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF GK
Subjt:  MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGK

Query:  VESA
        +  A
Subjt:  VESA

A0A6J1CGL0 Protein transport protein Sec61 subunit beta1.1e-3585.71Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRR+ ST +AGS G+VG GSSGG NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF GK+ 
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  SAHEG
         A  G
Subjt:  SAHEG

A0A6J1H102 Protein transport protein Sec61 subunit beta7.9e-3790.2Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+TGLV GGSSGG NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVF GK+ 
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  SA
         A
Subjt:  SA

A0A6J1JZ65 Protein transport protein Sec61 subunit beta7.9e-3790.2Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+TGLV GGSSGG NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVF GK+ 
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

Query:  SA
         A
Subjt:  SA

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta3.1e-0643Show/hide
Query:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE
        MA   SQ+ +  +   R    AP G+A A   LRRR V  +  +G+T             + FYTDD PG K+SP VV+ MSL FI FVT LHV VGK +
Subjt:  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVE

P38389 Protein transport protein Sec61 subunit beta5.9e-1364.1Show/hide
Query:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV
        RGSAAATA +RRR+   TS AG     GGG+SGG   +ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV +GK+
Subjt:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV

P60467 Protein transport protein Sec61 subunit beta3.8e-0438.46Show/hide
Query:  TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF
        T    +  SS   P       +A +T   R+     T +AG T      S+G   M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++
Subjt:  TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF

P60468 Protein transport protein Sec61 subunit beta3.8e-0438.46Show/hide
Query:  TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF
        T    +  SS   P       +A +T   R+     T +AG T      S+G   M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++
Subjt:  TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF

Q9CQS8 Protein transport protein Sec61 subunit beta3.8e-0438.46Show/hide
Query:  TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF
        T    +  SS   P       +A +T   R+     T +AG T      S+G   M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++
Subjt:  TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein4.2e-1464.1Show/hide
Query:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV
        RGSAAATA +RRR+   TS AG     GGG+SGG   +ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV +GK+
Subjt:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein4.2e-1464.1Show/hide
Query:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV
        RGSAAATA +RRR+   TS AG     GGG+SGG   +ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV +GK+
Subjt:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein4.2e-1464.1Show/hide
Query:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV
        RGSAAATA +RRR+   TS AG     GGG+SGG   +ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV +GK+
Subjt:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein4.2e-1464.1Show/hide
Query:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV
        RGSAAATA +RRR+   TS AG     GGG+SGG   +ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV +GK+
Subjt:  RGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGG--NNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKV

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein1.1e-2773.47Show/hide
Query:  MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF
        MARG+SQSQ   S  SST+RPG+ APRGSAAATAG+RRRR+G      S G  G G SG +NMLRFYTDDAPGLKISPTVVL+MSLCFIGFVT LHVF
Subjt:  MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGAGGTACTTCTCAATCCCAATCTGCATCCTCCTCCACCTCTAGGCCTGGCGTCGTGGCTCCCCGCGGCTCCGCGGCTGCGACGGCCGGCCTCCGCCGTCGCCG
TGTTGGCTCCACTTCCACCGCCGGTTCTACTGGACTTGTTGGCGGCGGATCCAGCGGCGGAAACAACATGCTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTT
CTCCCACCGTCGTCCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTATTTGTGGGTAAAGTGGAAAGTGCACATGAAGGTATCTTTGTTCACAAG
GTAGAGTATTTAGAGAATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGAGGTACTTCTCAATCCCAATCTGCATCCTCCTCCACCTCTAGGCCTGGCGTCGTGGCTCCCCGCGGCTCCGCGGCTGCGACGGCCGGCCTCCGCCGTCGCCG
TGTTGGCTCCACTTCCACCGCCGGTTCTACTGGACTTGTTGGCGGCGGATCCAGCGGCGGAAACAACATGCTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTT
CTCCCACCGTCGTCCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTATTTGTGGGTAAAGTGGAAAGTGCACATGAAGGTATCTTTGTTCACAAG
GTAGAGTATTTAGAGAATGGATAA
Protein sequenceShow/hide protein sequence
MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRVGSTSTAGSTGLVGGGSSGGNNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFVGKVESAHEGIFVHK
VEYLENG