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Tan0008911 (gene) of Snake gourd v1 genome

Gene IDTan0008911
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein RADIALIS-like 1
Genome locationLG02:7838610..7839121
RNA-Seq ExpressionTan0008911
SyntenyTan0008911
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]6.4e-2985.33Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYR
        M+SM+AHG  T WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHY+LLV+DVKHIE GE+ FPYR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYR

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]3.2e-2881.82Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSS
        M+SM+AHG  TTWT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HY+LLV+DVKHIE GE+ FPYR S
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.2e-2882.05Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR
        M+SMSAHG G  WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHY+LL++DVKHIE G+V FPYR+SR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]7.1e-2882.05Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR
        M+SMSAHG G  WTAKQNKAFE+ALA+YDQD P+RWLNVAKAIGGKTEEEVKRHY++LV+DVKHIE G+V FPYRSSR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]4.2e-2883.33Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR
        M+SMSAHG   +WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHY+LL+ DVK IE GEV FPY  SR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR

TrEMBL top hitse value%identityAlignment
A0A1S3BGF6 protein RADIALIS-like 11.5e-2882.05Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR
        M+SMSAHG G  WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHY+LL++DVKHIE G+V FPYR+SR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR

A0A5A7T3V4 Protein RADIALIS-like 13.1e-2985.33Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYR
        M+SM+AHG  T WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHY+LLV+DVKHIE GE+ FPYR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYR

A0A6J1C4I7 protein RADIALIS-like 13.4e-2885.33Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYR
        M+SMSAHG G +WTA QNKAFE+ALAVYD+DTP+RWLNVAKAIG KTEEEVKRHY+LLV+DVKHIEFGEVSFPYR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYR

A0A6J1GKK4 protein RADIALIS-like 12.0e-2883.33Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR
        M+SMSAHG   +WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHY+LL+ DVK IE GEV FPY  SR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR

A0A6J1IA78 protein RADIALIS-like 13.4e-2882.05Show/hide
Query:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR
        M+SMSAHG G  WTAKQNKAFE+ALA+YDQD P+RWLNVAKAIGGKTEEEVKRHY++LV+DVKHIE G+V FPYRSSR
Subjt:  MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.2e-2371.43Show/hide
Query:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS
        SSMS+   G +WTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHYELLV D+  IE G V FP YR+S
Subjt:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS

Q1A173 Protein RADIALIS-like 68.2e-1968.85Show/hide
Query:  WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP
        WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY++LV+D+ +IE G V  P
Subjt:  WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP

Q58FS3 Transcription factor RADIALIS2.7e-2263.51Show/hide
Query:  SAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS
        S  G G  W+AK+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HYE+LV+D+K+IE G+V FP YR++
Subjt:  SAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS

Q6NNN0 Protein RADIALIS-like 31.4e-1859.74Show/hide
Query:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS
        +SMS+     +WT K+NK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHYELL+ DV  IE G    P YRS+
Subjt:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS

Q9SIJ5 Protein RADIALIS-like 21.8e-2169.01Show/hide
Query:  SMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP
        SMS++G G +WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y+LLV D++ IE G V FP
Subjt:  SMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.7e-1961.11Show/hide
Query:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP
        SSMS+    ++WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY++LV+D+ +IE   V  P
Subjt:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP

AT1G75250.1 RAD-like 65.8e-2068.85Show/hide
Query:  WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP
        WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY++LV+D+ +IE G V  P
Subjt:  WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP

AT1G75250.2 RAD-like 65.8e-2068.85Show/hide
Query:  WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP
        WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY++LV+D+ +IE G V  P
Subjt:  WTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP

AT2G21650.1 Homeodomain-like superfamily protein1.2e-2269.01Show/hide
Query:  SMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP
        SMS++G G +WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y+LLV D++ IE G V FP
Subjt:  SMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP

AT4G39250.1 RAD-like 13.0e-2471.43Show/hide
Query:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS
        SSMS+   G +WTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHYELLV D+  IE G V FP YR+S
Subjt:  SSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFP-YRSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAATGTCTGCTCATGGATATGGTACTACGTGGACCGCAAAGCAAAACAAAGCGTTTGAGAAAGCTTTGGCAGTGTATGATCAAGACACACCTGAGCGATGGCT
AAATGTTGCTAAGGCCATTGGTGGAAAAACCGAAGAGGAAGTGAAGAGGCACTACGAGCTTCTTGTAGATGATGTTAAACATATTGAGTTTGGTGAAGTTTCTTTCCCAT
ATCGAAGTTCGAGATGA
mRNA sequenceShow/hide mRNA sequence
GCTTTTGAGTCCACTTTCTTATCCATTTCCTTTGTTTTTACTTCAAACCCCTTTGAAGCTTTCTTTTTATTTTGTCTTTGGGTTAACTTTCTTACCAAATATAGCATTAA
TCAATAATGTCTTCAATGTCTGCTCATGGATATGGTACTACGTGGACCGCAAAGCAAAACAAAGCGTTTGAGAAAGCTTTGGCAGTGTATGATCAAGACACACCTGAGCG
ATGGCTAAATGTTGCTAAGGCCATTGGTGGAAAAACCGAAGAGGAAGTGAAGAGGCACTACGAGCTTCTTGTAGATGATGTTAAACATATTGAGTTTGGTGAAGTTTCTT
TCCCATATCGAAGTTCGAGATGACAAGAAGAGGTAATATATGTATAGAAATGAATTTAATTAGCTATTAATAATGTAATGCTCAAGGCTTAGGATCCCCTACGACCTGAC
CATGTCACCATATCATTCATACTATCCCTGCTGAGCTGCTTGCGAGAGTAAAGACTTTCCCCATGAACCAAC
Protein sequenceShow/hide protein sequence
MSSMSAHGYGTTWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYELLVDDVKHIEFGEVSFPYRSSR