; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0008939 (gene) of Snake gourd v1 genome

Gene IDTan0008939
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG02:59143194..59144013
RNA-Seq ExpressionTan0008939
SyntenyTan0008939
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041922.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-2969.3Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANVKAR
        M++VLAKK++SL  AK  MDSLK MFGQP   LRHEAIKYIY KRMKE TSVREH+LDMM+HFNI EVN GAIDEAN  QRFQ L K KGKEVEANV A 
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANVKAR

Query:  SPPRLEQERLSRPK
        +  + E+   S+PK
Subjt:  SPPRLEQERLSRPK
KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]7.4e-2974.23Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK++SL   K IMDSLK MFGQP   LRHEAIKYIY KRMKE TS++EH+LDMM+HFNI EVN GAID ANQ   FQ LTK KGKEVEANV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
KAA0047422.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-2977.32Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK++SL  AK IMDSLK MFGQP   LRHEAIKYIY K MKE TSVREH+LDMM+HFNI EVN GAIDEAN  QRFQ LTK K KEVEANV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-3077.32Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK++SL  AK IMDSLK MFGQP   LRHE IKYIY KRMKE TSVREH+L+MM+HFNI EVN GAIDEAN  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
TYK27705.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-2975.26Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ SL  AK IMDSLKEMFGQPS  LRHEAIKYIY  +MKE TSVREHILD M+HFNI EVN G I+EANQL RFQ LT  K KEVE NV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
TrEMBL top hitse value%identityAlignment
A0A5D3BI96 Gag/pol protein2.5e-3077.32Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK++SL  AK IMDSLK MFGQP   LRHE IKYIY KRMKE TSVREH+L+MM+HFNI EVN GAIDEAN  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
A0A5D3BWP2 Gag/pol protein2.1e-2977.32Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK++SL  AK IMDSLK MFGQP   LRHEAIKYIY K MKE TSVREH+LDMM+HFNI EVN GAIDEAN  QRFQ LTK K KEVEANV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
A0A5D3CU35 Gag/pol protein3.6e-2974.23Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK++SL   K IMDSLK MFGQP   LRHEAIKYIY KRMKE TS++EH+LDMM+HFNI EVN GAID ANQ   FQ LTK KGKEVEANV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
A0A5D3D345 Gag/pol protein4.7e-2969.3Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANVKAR
        M++VLAKK++SL  AK  MDSLK MFGQP   LRHEAIKYIY KRMKE TSVREH+LDMM+HFNI EVN GAIDEAN  QRFQ L K KGKEVEANV A 
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANVKAR

Query:  SPPRLEQERLSRPK
        +  + E+   S+PK
Subjt:  SPPRLEQERLSRPK
A0A5D3DWL6 Gag/pol protein1.6e-2975.26Show/hide
Query:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ SL  AK IMDSLKEMFGQPS  LRHEAIKYIY  +MKE TSVREHILD M+HFNI EVN G I+EANQL RFQ LT  K KEVE NV
Subjt:  MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTGGCGAAGAAATACAAATCTTTGGGCATGGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGAGACCTCTGTTAGAGAACATATCCTGGACATGATGGTCCACTTCAATATTGTTGAAGTAAATAGTGGCGCCATCG
ATGAAGCAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTAAAGCAAGATCACCCCCAAGGTTGGAACAGGAGAGGTTG
TCTCGACCAAAGCAGTGGGAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTGGCGAAGAAATACAAATCTTTGGGCATGGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGAGACCTCTGTTAGAGAACATATCCTGGACATGATGGTCCACTTCAATATTGTTGAAGTAAATAGTGGCGCCATCG
ATGAAGCAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTAAAGCAAGATCACCCCCAAGGTTGGAACAGGAGAGGTTG
TCTCGACCAAAGCAGTGGGAGACTTGA
Protein sequenceShow/hide protein sequence
MTDVLAKKYKSLGMAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEETSVREHILDMMVHFNIVEVNSGAIDEANQLQRFQTLTKAKGKEVEANVKARSPPRLEQERL
SRPKQWET