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Tan0009040 (gene) of Snake gourd v1 genome

Gene IDTan0009040
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG11:56598743..56618300
RNA-Seq ExpressionTan0009040
SyntenyTan0009040
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-1046.6Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLYGT+CT                  VEIELPVPD LP     S    ST                 GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GIV
        G++
Subjt:  GIV

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]6.1e-0840.54Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP------------------------YLVCLSGKTGSTGIVREVNDVCWLHAVCRAK
        MTE LS +LY T+CTH                 VEIELPVPD LP                          V  +   GS GI+R  +DVCWLHAV RAK
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP------------------------YLVCLSGKTGSTGIVREVNDVCWLHAVCRAK

Query:  LAGSSGGGIVT
        +AGS  GG+ T
Subjt:  LAGSSGGGIVT

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]6.1e-0849.44Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP--YLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT
        MTE LS  LYGT+CT                  VEIELPVPD LP   +   +   GS GIVRE N VCWL AV RAK  G  GGG+ T
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP--YLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.6e-0848.86Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT
        MTE LS RLYGT+CT                  VEIELPV D LP     S   + S GIVR  +DVCWLH+V RAK A   GGG+ T
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-1046.6Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLYGT+CT                  VEIELPVPD LP     S    ST                 GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GIV
        G++
Subjt:  GIV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase2.4e-1046.6Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLYGT+CT                  VEIELPVPD LP     S    ST                 GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GIV
        G++
Subjt:  GIV

A0A5D3C0X3 Retrotrans_gag domain-containing protein3.0e-0840.54Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP------------------------YLVCLSGKTGSTGIVREVNDVCWLHAVCRAK
        MTE LS +LY T+CTH                 VEIELPVPD LP                          V  +   GS GI+R  +DVCWLHAV RAK
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP------------------------YLVCLSGKTGSTGIVREVNDVCWLHAVCRAK

Query:  LAGSSGGGIVT
        +AGS  GG+ T
Subjt:  LAGSSGGGIVT

A0A5D3C4P7 Retrotrans_gag domain-containing protein3.0e-0849.44Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP--YLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT
        MTE LS  LYGT+CT                  VEIELPVPD LP   +   +   GS GIVRE N VCWL AV RAK  G  GGG+ T
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLP--YLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT

A0A5D3CU23 Retrotrans_gag domain-containing protein1.7e-0848.86Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT
        MTE LS RLYGT+CT                  VEIELPV D LP     S   + S GIVR  +DVCWLH+V RAK A   GGG+ T
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVT

A0A5D3DX39 Reverse transcriptase2.4e-1046.6Show/hide
Query:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLYGT+CT                  VEIELPVPD LP     S    ST                 GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYGTMCTH-----------------VEIELPVPDNLPYLVCLSGKTGST-----------------GIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GIV
        G++
Subjt:  GIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCATGTGCACACACGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTGTGCTTATCAGGTAAAAC
AGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGTCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGGATTGTTACCTTAAGTGCTA
TCTCCAGGGCTTGGACAATGCGCGCCTACCTTCTCACTGCCACAAGAGGGTTGTTGTGTATGGTCGGACCATTAAAACGTTGTTGTTCATTAGAGGAGCAGTGGGGACTT
AAGGAGCAAGAAGTAGACACGGGAGTAAAATTTGACCCAGTAGTGTGTACGAACAACCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCATGTGCACACACGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTGTGCTTATCAGGTAAAAC
AGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGTCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGGATTGTTACCTTAAGTGCTA
TCTCCAGGGCTTGGACAATGCGCGCCTACCTTCTCACTGCCACAAGAGGGTTGTTGTGTATGGTCGGACCATTAAAACGTTGTTGTTCATTAGAGGAGCAGTGGGGACTT
AAGGAGCAAGAAGTAGACACGGGAGTAAAATTTGACCCAGTAGTGTGTACGAACAACCTGTGA
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTMCTHVEIELPVPDNLPYLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGIVTLSAISRAWTMRAYLLTATRGLLCMVGPLKRCCSLEEQWGL
KEQEVDTGVKFDPVVCTNNL