CuGenDBv2

Gene ID	Tan0009048
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG09:38647908..38648882
RNA-Seq Expression	Tan0009048
Synteny	Tan0009048
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

3.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

3.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

A0A5A7TU93 Gag/pol protein

1.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

A0A5A7TWB9 Gag/pol protein

1.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

A0A5D3CPJ6 Gag/pol protein

1.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

A0A5D3CSZ6 Gag/pol protein

1.9e-69

53.1

Show/hide

Query:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------
        M+S+ +++L A+KL G N  +WKN +  +L++DDL+FVL EECPQVP +NA+R VR+ Y RW KAN+KA+ Y+LA                         
Subjt:  MSSSIISLLGAEKLTGENMMTWKNKL--ILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLA-------------------------

Query:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG
                               +G SVR+HVL+MMVHFN+AE N A IDE+SQVSFILE+LP+SFLQFRSN VMNK+ + LT+LLNELQTF+SLMKI+G
Subjt:  -----------------------KGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQG

Query:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK
         KGE NVA+++  +HRGSTSGTK++ SSS N + KK   KK G+G +AN AAA+  KK K  A KG CFHCN++GHWK NCPKY+AEKKK
Subjt:  SKGETNVASTS--YHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCNEDGHWKWNCPKYIAEKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGGAAAAGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCATTTTGGTAGTGGATGATCTGAAGTTTGTGCT
AACTGAGGAGTGTCCTCAGGTGCCAGGTTCGAATGCGTCACGAAATGTTCGTGATGCATATGGTCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTTGCAA
AGGGTACATCTGTTCGGGATCATGTCCTGGATATGATGGTACACTTTAACATCGCAGAGTCGAATGTTGCTTCCATTGATGAGTCGAGCCAGGTTAGCTTCATTCTGGAA
ACACTTCCAGATAGTTTCCTGCAGTTTAGAAGTAATGTTGTTATGAACAAGCTTACTTTTAATCTTACCTCCCTTCTGAATGAACTCCAGACCTTTCAGTCTTTGATGAA
AATTCAGGGATCAAAAGGCGAGACAAATGTTGCCAGTACGAGTTATCACAGAGGTTCGACCTCTGGGACAAAAACAGTGGCTTCATCTTCTTCTAACCTAAGAGGAAAGA
AGAAGAACGTGAAGAAGGTTGGTAAAGGGAAACAGGCTAACAAAGCTGCCGCCCAGAAGGGCAAGAAAGTCAAAGACGTTGCTGATAAAGGAAAGTGTTTCCACTGCAAC
GAAGACGGGCATTGGAAATGGAACTGTCCGAAGTACATTGCAGAAAAGAAGAAGGAAGGGAATTGA

mRNA sequence

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Protein sequence

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MSSSIISLLGAEKLTGENMMTWKNKLILVVDDLKFVLTEECPQVPGSNASRNVRDAYGRWIKANDKAKVYMLAKGTSVRDHVLDMMVHFNIAESNVASIDESSQVSFILE
TLPDSFLQFRSNVVMNKLTFNLTSLLNELQTFQSLMKIQGSKGETNVASTSYHRGSTSGTKTVASSSSNLRGKKKNVKKVGKGKQANKAAAQKGKKVKDVADKGKCFHCN
EDGHWKWNCPKYIAEKKKEGN

Tan0009048 (gene) of Snake gourd v1 genome