| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0054515.1 gag/pol protein [Cucumis melo var. makuwa] | 3.0e-49 | 46.72 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
MSSS I LL D+L G+N+ TWKS LN ILVI DLRFVL EECP P+ A+++VRDA+D+WT+ANDKAR++ILAS+SD+L
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
Query: ----------------------------------------------------------------------------------AKEPLELIHSDLCGPMNV
AKEPLELIHS LCGPMNV
Subjt: ----------------------------------------------------------------------------------AKEPLELIHSDLCGPMNV
Query: KARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
KARGG+EYFISFIDDYSRYGYLYLM HKSE LEKFKEYK EVEN L K IK LRSDRGG
Subjt: KARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| KAA0059677.1 gag/pol protein [Cucumis melo var. makuwa] | 6.2e-47 | 43.17 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
M+SS +QLLA +KLNGDN+ WKSNLNTILV+DDLRFVLTEECP P+S+A +T A+D+W +AN+KA VYILAS+SDVLAK+
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
Query: -------------------------------------------------------------------------------------------------PLE
LE
Subjt: -------------------------------------------------------------------------------------------------PLE
Query: LIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
L+H D CGPMNVKARG YEYFISFIDDYSRYG++YL+ +KS + EKFKEYKAEVEN GKTIKTLRSDRGG
Subjt: LIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| KAA0059678.1 gag/pol protein [Cucumis melo var. makuwa] | 9.9e-45 | 41.84 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
MSSS I LL D+L +N+ TWKS LN ILVI DLRFVL EECP P+ A+++VRDA+D+WT+ANDK+R++IL S+SD+L
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -----AKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
AKEPLELIHSDLCGPMNVKARGG+EYFI FIDDYSRYGYLYLM HK E LEKFKEYKAEVEN L K IK LRSDRGG
Subjt: -----AKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| TYJ98650.1 gag/pol protein [Cucumis melo var. makuwa] | 6.0e-42 | 43.65 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
MSS I LL D+L G+N+ TWKS LN ILVI DLRFVL EEC P A+++VRDA+D+WT+ANDKAR++ILAS+SD+L
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
Query: ----------------------------------------------------------------------------------------AKEPLELIHSDL
AKEPLELIHSDL
Subjt: ----------------------------------------------------------------------------------------AKEPLELIHSDL
Query: CGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSL
CGPMNVKARGG+EYFISFIDDYSRYGYLYLM HKSE LEKFKEYK EVEN L
Subjt: CGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSL
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| TYK29762.1 gag/pol protein [Cucumis melo var. makuwa] | 1.5e-45 | 42.45 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
M+SS +QLLAS+KLNGDN+ WKSNLNTIL + DLRFVLT +CP P+S+A RT R A+D+W +AN+KARVYILAS+SDVLAK+
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---PLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTI-KTLRSDRGG
PLELIH DLC PMNVKA+GGYEYFISFIDDYSRYG++YL+ +KS++ EKFKEYKAEVEN GKTI TLRSDRGG
Subjt: ---PLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTI-KTLRSDRGG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7ULG4 Gag/pol protein | 1.4e-49 | 46.72 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
MSSS I LL D+L G+N+ TWKS LN ILVI DLRFVL EECP P+ A+++VRDA+D+WT+ANDKAR++ILAS+SD+L
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
Query: ----------------------------------------------------------------------------------AKEPLELIHSDLCGPMNV
AKEPLELIHS LCGPMNV
Subjt: ----------------------------------------------------------------------------------AKEPLELIHSDLCGPMNV
Query: KARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
KARGG+EYFISFIDDYSRYGYLYLM HKSE LEKFKEYK EVEN L K IK LRSDRGG
Subjt: KARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| A0A5A7UWW4 Gag/pol protein | 4.8e-45 | 41.84 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
MSSS I LL D+L +N+ TWKS LN ILVI DLRFVL EECP P+ A+++VRDA+D+WT+ANDK+R++IL S+SD+L
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -----AKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
AKEPLELIHSDLCGPMNVKARGG+EYFI FIDDYSRYGYLYLM HK E LEKFKEYKAEVEN L K IK LRSDRGG
Subjt: -----AKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| A0A5A7UYF5 Gag/pol protein | 3.0e-47 | 43.17 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
M+SS +QLLA +KLNGDN+ WKSNLNTILV+DDLRFVLTEECP P+S+A +T A+D+W +AN+KA VYILAS+SDVLAK+
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
Query: -------------------------------------------------------------------------------------------------PLE
LE
Subjt: -------------------------------------------------------------------------------------------------PLE
Query: LIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
L+H D CGPMNVKARG YEYFISFIDDYSRYG++YL+ +KS + EKFKEYKAEVEN GKTIKTLRSDRGG
Subjt: LIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| A0A5D3DDH0 Gag/pol protein | 5.0e-42 | 39.39 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
MSSS I LL D+L G N+ WKS LN ILVI DLRFVL E+CP + A+++VRDA+D+WT+AND+A ++ILAS+SD+L
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVL-------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------AKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
AKEPLELIHSDLCGPMNVKARG +EYFISFIDDYSRYGYLYLM HKSE LEKFKEYKAEVEN L K IK LRSDRGG
Subjt: --------------------AKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| A0A5D3E1K0 Gag/pol protein | 7.4e-46 | 42.45 | Show/hide |
Query: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
M+SS +QLLAS+KLNGDN+ WKSNLNTIL + DLRFVLT +CP P+S+A RT R A+D+W +AN+KARVYILAS+SDVLAK+
Subjt: MSSSFIQLLASDKLNGDNFGTWKSNLNTILVIDDLRFVLTEECPSPPSSSATRTVRDAFDKWTRANDKARVYILASISDVLAKE----------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---PLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTI-KTLRSDRGG
PLELIH DLC PMNVKA+GGYEYFISFIDDYSRYG++YL+ +KS++ EKFKEYKAEVEN GKTI TLRSDRGG
Subjt: ---PLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTI-KTLRSDRGG
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.2e-06 | 32 | Show/hide |
Query: KEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRG
K PL ++HSD+CGP+ YF+ F+D ++ Y YL+ +KS+ F+++ A+ E + L D G
Subjt: KEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRG
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.1e-13 | 43.84 | Show/hide |
Query: LELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
L+L++SD+CGPM +++ GG +YF++FIDD SR ++Y++ K + + F+++ A VE G+ +K LRSD GG
Subjt: LELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 8.0e-05 | 30.26 | Show/hide |
Query: EPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSE--TLEKFKEYKAEVENSLGKTIKTLRSDRG
EP + +H+D+ GP++ + YFISF D+ +R+ ++Y +H + E L F A ++N + ++ DRG
Subjt: EPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSE--TLEKFKEYKAEVENSLGKTIKTLRSDRG
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.2e-06 | 34.94 | Show/hide |
Query: SISDVLAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
S S + + PLE I+SD+ + + Y Y++ F+D ++RY +LY + KS+ E F +K +EN I T SD GG
Subjt: SISDVLAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 8.5e-07 | 36.14 | Show/hide |
Query: SISDVLAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
S S + + +PLE I+SD+ + + Y Y++ F+D ++RY +LY + KS+ + F +K+ VEN I TL SD GG
Subjt: SISDVLAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKEYKAEVENSLGKTIKTLRSDRGG
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