CuGenDBv2

Gene ID	Tan0009137
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG08:16641886..16642527
RNA-Seq Expression	Tan0009137
Synteny	Tan0009137
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

8.6e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

8.6e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

8.6e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]

9.8e-80

75.5

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Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        MS+S IQLL  DKLNGDNY  WKSNLN  LV+DDLRF+L EECPP P+  ANR VRDAYDRW+ ANEKARVYILA+IS+VLSKKHE +AT +EIM SLQA
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        +FGQPS++L HDA+KYVYN RMKEG+SVREHVLNMMVHFNVAEVN  V++E SQV FIM+SLPKS+ QF+ NA+MNKIEY+LTTLLNELQ +ESL+K+KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

XP_038885834.1 uncharacterized protein LOC120076130 [Benincasa hispida]

2.9e-76

77.25

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Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+SS IQLL FDKL G+NY TWK+NLN  LV+DDL+FIL EECPP PSS ANR VRDAY+RWI  N+K   YILANISDVL+KKHESM T K+IM  L+ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNEL
        MFGQPS SLRHD++KY+YN  MKEGASVREHVLNMMVHFNVAEVN VV+DEKSQ+ FI+ESLPKSFLQF TNA+MNKIEYNLTTLLNEL
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

4.2e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

A0A5A7TU93 Gag/pol protein

4.2e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

A0A5A7TWB9 Gag/pol protein

4.2e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

A0A5D3CPJ6 Gag/pol protein

4.2e-76

70.79

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        M+S+ + +L  DKLNG+NY +WK+ +N  L++DDLRF+L+EECP  P++ A R VR+ Y+RW  ANEKAR YILA++S+VL+KKHESM TA+EIM SLQ 
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        MFGQ S  ++HDALKY+YN RM EGASVREHVLNMMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+NAVMNKI Y LTTLLNELQTFESLMK KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

Query:  KK
        +K
Subjt:  KK

A0A6J1DWG6 uncharacterized protein LOC111025021

4.7e-80

75.5

Show/hide

Query:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA
        MS+S IQLL  DKLNGDNY  WKSNLN  LV+DDLRF+L EECPP P+  ANR VRDAYDRW+ ANEKARVYILA+IS+VLSKKHE +AT +EIM SLQA
Subjt:  MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQA

Query:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG
        +FGQPS++L HDA+KYVYN RMKEG+SVREHVLNMMVHFNVAEVN  V++E SQV FIM+SLPKS+ QF+ NA+MNKIEY+LTTLLNELQ +ESL+K+KG
Subjt:  MFGQPSSSLRHDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGAGCTCTTTTATCCAGTTACTTGTCTTCGATAAACTTAACGGTGATAACTACAGAACCTGGAAATCAAACTTGAATATGTTTCTTGTTGTTGATGATCTGAGGTT
CATCTTAATGGAGGAATGTCCTCCCCCTCCCAGCTCGACTGCAAACCGAATTGTTCGGGATGCATATGACAGATGGATTACGGCTAATGAGAAGGCCAGAGTCTACATCT
TAGCCAATATATCTGATGTGTTGTCTAAGAAGCATGAGAGCATGGCCACCGCGAAGGAGATCATGGGGTCATTACAGGCGATGTTTGGACAACCGTCCTCATCGCTCCGC
CATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGAGCTTCTGTTAGGGAACATGTCCTCAACATGATGGTCCACTTCAACGTGGCAGAAGTAAATGGTGT
TGTCATAGATGAAAAGAGTCAGGTTAGCTTTATTATGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCACCAATGCGGTGATGAATAAAATAGAATATAACCTGACTA
CTCTCCTCAATGAGCTTCAGACTTTTGAATCCCTGATGAAATCAAAGGGAAAAAAAAGGAGGCAAATGTTGTCACTTCAAAGAAGTTCTTAA

mRNA sequence

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Protein sequence

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MSSSFIQLLVFDKLNGDNYRTWKSNLNMFLVVDDLRFILMEECPPPPSSTANRIVRDAYDRWITANEKARVYILANISDVLSKKHESMATAKEIMGSLQAMFGQPSSSLR
HDALKYVYNFRMKEGASVREHVLNMMVHFNVAEVNGVVIDEKSQVSFIMESLPKSFLQFRTNAVMNKIEYNLTTLLNELQTFESLMKSKGKKRRQMLSLQRSS

Tan0009137 (gene) of Snake gourd v1 genome