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Tan0009138 (gene) of Snake gourd v1 genome

Gene IDTan0009138
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG11:45400308..45411874
RNA-Seq ExpressionTan0009138
SyntenyTan0009138
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]4.1e-2146.2Show/hide
Query:  MSDQRGKA------LSSKGKSPTSSSNI-PAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQ
        MS ++G A       SSKG  P+SSSN  P+PMS  QY MDLGFT V R R+R +SI I    ES T PPRPS +L+RP+  +  MRP   P +PSS+++
Subjt:  MSDQRGKA------LSSKGKSPTSSSNI-PAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQ

Query:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEV--KQWFADNGYL-QDLPKKK
         S+ PTT+ +AV   KRF+P+PEIK+YF+KS+ + + I+E  +    ++E+  K +  D  +L +DL KKK
Subjt:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEV--KQWFADNGYL-QDLPKKK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.1e-2145.93Show/hide
Query:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTT-ITPMRPSVSPTTPSSSQQGSSIPTTFVE
        R  + SSKG  P SSSN  P+P+S DQYAMDLGFT V R  +RS  I I    ES T PPRPS +L+RP++ +  MRP   P +PSS+++ S+ PTT+ +
Subjt:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTT-ITPMRPSVSPTTPSSSQQGSSIPTTFVE

Query:  AVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKE-VKQWFAD--NGYLQDLPK-KKNAEFLNSKSK
        AV P KRF+P+PEIK+YF+K + + + I+E  +     +E V + F +  N  L+DL K +K  EF+ + +K
Subjt:  AVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKE-VKQWFAD--NGYLQDLPK-KKNAEFLNSKSK

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]5.3e-2146.98Show/hide
Query:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTT-ITPMRPSVSPTTPSSSQQGSSIPTTFVE
        R  + SS+G  P+SSSN  P+PMS DQYAMDLGFT V R R RS+ IQI    +S T PPR SA+L+RP++ +  MRP  SP    S+++ S+ PTT+ +
Subjt:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTT-ITPMRPSVSPTTPSSSQQGSSIPTTFVE

Query:  AVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKE-VKQWFADN
         + P KRF+P+ EIK+YF+K + + +SI+E  +    ++E V + F DN
Subjt:  AVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKE-VKQWFADN

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]4.1e-3746.38Show/hide
Query:  MSDQRGKA------LSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRP-TTITPMRPSVSPTTPSSSQQ
        MS ++G A       SSKG  P+SSSN  P+PMS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +L+ P   +  MR S S   PSS+++
Subjt:  MSDQRGKA------LSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRP-TTITPMRPSVSPTTPSSSQQ

Query:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEVKQWFADNGYLQDLPKKKNAEFLNSKSKLLAALAQTTTEADLQKNLNQVT
         S++PTT+ +AV P K+F+P+ EIK+YF+K + I + I+E  +              NG LQD+ ++KNA+FLN K K LAAL Q T +AD Q+ L+   
Subjt:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEVKQWFADNGYLQDLPKKKNAEFLNSKSKLLAALAQTTTEADLQKNLNQVT

Query:  SIASSSSPQNSEVEEDD-----EYDINDPFLDSHP
        + +SSS P  S ++ED+     EYD++DPFLDS P
Subjt:  SIASSSSPQNSEVEEDD-----EYDINDPFLDSHP

TYK11076.1 hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]9.1e-2151.16Show/hide
Query:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQGSSIPTTFVE
        R  + SSKG  P+SSSN  P+PMS DQY MDLGFT V R R+RS+SI+     ES T PPRP A+L+RP+  +  MRP   P +PSS+++ S+ PTT+ +
Subjt:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQGSSIPTTFVE

Query:  AVNPPKRFIPKPEIKNYFEKSLQISESIV
        AV P KRF+P+P+IK+YF+K + + + I+
Subjt:  AVNPPKRFIPKPEIKNYFEKSLQISESIV

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein5.2e-2245.93Show/hide
Query:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTT-ITPMRPSVSPTTPSSSQQGSSIPTTFVE
        R  + SSKG  P SSSN  P+P+S DQYAMDLGFT V R  +RS  I I    ES T PPRPS +L+RP++ +  MRP   P +PSS+++ S+ PTT+ +
Subjt:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTT-ITPMRPSVSPTTPSSSQQGSSIPTTFVE

Query:  AVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKE-VKQWFAD--NGYLQDLPK-KKNAEFLNSKSK
        AV P KRF+P+PEIK+YF+K + + + I+E  +     +E V + F +  N  L+DL K +K  EF+ + +K
Subjt:  AVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKE-VKQWFAD--NGYLQDLPK-KKNAEFLNSKSK

A0A5D3BI61 Uncharacterized protein2.0e-3746.38Show/hide
Query:  MSDQRGKA------LSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRP-TTITPMRPSVSPTTPSSSQQ
        MS ++G A       SSKG  P+SSSN  P+PMS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +L+ P   +  MR S S   PSS+++
Subjt:  MSDQRGKA------LSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRP-TTITPMRPSVSPTTPSSSQQ

Query:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEVKQWFADNGYLQDLPKKKNAEFLNSKSKLLAALAQTTTEADLQKNLNQVT
         S++PTT+ +AV P K+F+P+ EIK+YF+K + I + I+E  +              NG LQD+ ++KNA+FLN K K LAAL Q T +AD Q+ L+   
Subjt:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEVKQWFADNGYLQDLPKKKNAEFLNSKSKLLAALAQTTTEADLQKNLNQVT

Query:  SIASSSSPQNSEVEEDD-----EYDINDPFLDSHP
        + +SSS P  S ++ED+     EYD++DPFLDS P
Subjt:  SIASSSSPQNSEVEEDD-----EYDINDPFLDSHP

A0A5D3BM67 Uncharacterized protein5.8e-2150Show/hide
Query:  MSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRP-TTITPMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSL
        MS DQYAMDLGFT V R R+RS+SI+I  S ES T PPRPSA+L+RP      MRP   P +PSS+++ S+ PTT+ + V P KRF+P+PEIK+YF+KS+
Subjt:  MSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRP-TTITPMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSL

Query:  QISESIVEYNFSHAGI-KEVKQWFADNGYL--QDLPKKKN
         + + I+E  +    + K V + F DN  L  +DL K +N
Subjt:  QISESIVEYNFSHAGI-KEVKQWFADNGYL--QDLPKKKN

A0A5D3CKX1 Uncharacterized protein4.4e-2151.16Show/hide
Query:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQGSSIPTTFVE
        R  + SSKG  P+SSSN  P+PMS DQY MDLGFT V R R+RS+SI+     ES T PPRP A+L+RP+  +  MRP   P +PSS+++ S+ PTT+ +
Subjt:  RGKALSSKGKSPTSSSN-IPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQGSSIPTTFVE

Query:  AVNPPKRFIPKPEIKNYFEKSLQISESIV
        AV P KRF+P+P+IK+YF+K + + + I+
Subjt:  AVNPPKRFIPKPEIKNYFEKSLQISESIV

E5GCE6 Uncharacterized protein2.0e-2146.2Show/hide
Query:  MSDQRGKA------LSSKGKSPTSSSNI-PAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQ
        MS ++G A       SSKG  P+SSSN  P+PMS  QY MDLGFT V R R+R +SI I    ES T PPRPS +L+RP+  +  MRP   P +PSS+++
Subjt:  MSDQRGKA------LSSKGKSPTSSSNI-PAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPT-TITPMRPSVSPTTPSSSQQ

Query:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEV--KQWFADNGYL-QDLPKKK
         S+ PTT+ +AV   KRF+P+PEIK+YF+KS+ + + I+E  +    ++E+  K +  D  +L +DL KKK
Subjt:  GSSIPTTFVEAVNPPKRFIPKPEIKNYFEKSLQISESIVEYNFSHAGIKEV--KQWFADNGYL-QDLPKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATCAGCGAGGCAAAGCCTTATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCTATGAGCGGCGATCAATACGCAATGGATCTGGGTTT
CACTCAGGTGAATCGCCCGAGAACCAGAAGCACATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTA
CCATTACACCAATGAGACCTTCCGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCGTCAATCCTCCCAAAAGGTTT
ATCCCTAAACCTGAAATCAAAAATTATTTCGAAAAATCACTTCAAATTTCTGAGTCAATTGTCGAATACAACTTTTCTCACGCAGGAATAAAAGAAGTGAAGCAATGGTT
TGCCGATAATGGCTACCTCCAAGACCTGCCAAAGAAGAAAAATGCAGAGTTTCTCAATTCCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATT
TACAAAAAAATTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCC
CATCCAATAATGCTTAATGGGCCATTAAGTGATGACATAGATGAGATGACAATTCTATATTTGCTGACGTTGATGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATCAGCGAGGCAAAGCCTTATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATTCCAGCTCCTATGAGCGGCGATCAATACGCAATGGATCTGGGTTT
CACTCAGGTGAATCGCCCGAGAACCAGAAGCACATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTA
CCATTACACCAATGAGACCTTCCGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCGTCAATCCTCCCAAAAGGTTT
ATCCCTAAACCTGAAATCAAAAATTATTTCGAAAAATCACTTCAAATTTCTGAGTCAATTGTCGAATACAACTTTTCTCACGCAGGAATAAAAGAAGTGAAGCAATGGTT
TGCCGATAATGGCTACCTCCAAGACCTGCCAAAGAAGAAAAATGCAGAGTTTCTCAATTCCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATT
TACAAAAAAATTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCC
CATCCAATAATGCTTAATGGGCCATTAAGTGATGACATAGATGAGATGACAATTCTATATTTGCTGACGTTGATGGAATAA
Protein sequenceShow/hide protein sequence
MSDQRGKALSSKGKSPTSSSNIPAPMSGDQYAMDLGFTQVNRPRTRSTSIQIRDSMESLTPPPRPSASLMRPTTITPMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRF
IPKPEIKNYFEKSLQISESIVEYNFSHAGIKEVKQWFADNGYLQDLPKKKNAEFLNSKSKLLAALAQTTTEADLQKNLNQVTSIASSSSPQNSEVEEDDEYDINDPFLDS
HPIMLNGPLSDDIDEMTILYLLTLME