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Tan0009186 (gene) of Snake gourd v1 genome

Gene IDTan0009186
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUPF0426 protein At1g28150, chloroplastic
Genome locationLG09:72462963..72464657
RNA-Seq ExpressionTan0009186
SyntenyTan0009186
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020036.1 UPF0426 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.5e-1345.71Show/hide
Query:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MAGLL HS+STASVL        E     I         + L L C++STN ICAF FNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   GI EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

XP_008439829.1 PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo]1.1e-1245.71Show/hide
Query:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MA LL HS+STASVL  E           I+        S+L L  N+STNGI AFFFNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   G+ EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

XP_022924196.1 UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata]1.0e-1346.43Show/hide
Query:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MAGLL HS+STASVL        E     I         + L L C++STNGICAF FNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   GI EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

XP_023518976.1 UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo]5.9e-1446.43Show/hide
Query:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MAGLL HS+STASVL        E     I         + L L C++STNGICAF FNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   GI EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

XP_038893812.1 UPF0426 protein At1g28150, chloroplastic [Benincasa hispida]1.9e-1243.57Show/hide
Query:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MA LL HS+S  SVL  E           I+       G++L L CN+ TNGI AFFFNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   G+ EE+DTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

TrEMBL top hitse value%identityAlignment
A0A0A0LT92 Uncharacterized protein4.5e-1244.29Show/hide
Query:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MA LL HS+STASVL  E         + I+        S+  L  N+STNGI AFFFNP  D V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   G+ EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

A0A1S3AZP7 UPF0426 protein At1g28150, chloroplastic5.4e-1345.71Show/hide
Query:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MA LL HS+STASVL  E           I+        S+L L  N+STNGI AFFFNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   G+ EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

A0A5D3BGH6 UPF0426 protein5.4e-1345.71Show/hide
Query:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MA LL HS+STASVL  E           I+        S+L L  N+STNGI AFFFNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVLGTE------SYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   G+ EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

A0A6J1E8W6 UPF0426 protein At1g28150, chloroplastic4.9e-1446.43Show/hide
Query:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MAGLL HS+STASVL        E     I         + L L C++STNGICAF FNP ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   GI EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

A0A6J1KGM3 UPF0426 protein At1g28150, chloroplastic1.2e-1245Show/hide
Query:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH
        MAGLL HS+STA VL        E     I         + L L CN+STN ICAF F P ED V+KEALK    +   L  G     L+          
Subjt:  MAGLLQHSTSTASVL------GTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVH

Query:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE
        +K  +K       V   GI EEVDTQGSVQEDGPTEIEIE
Subjt:  IKHTIKVISMAVGVSWNGIMEEVDTQGSVQEDGPTEIEIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGTCTTCTTCAACACTCCACTTCAACTGCCAGCGTTCTGGGAACGGAATCATATCTCGATTTTATTATCCAAAAAACCTATGCTGCCACTGGCAGCTATCTTCT
TCTCGCCTGCAATAGTTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGCAGAGGATCTCGTTATCAAAGAAGCTCTCAAGATGTCAGATCACTATTTGAATTGTT
TGGGTTTGGGATATTTTTTGGATGGTCTACATTTTATCAAATGCTGCTGCTTTGTAGTTCATATCAAACATACTATTAAAGTAATTTCTATGGCTGTAGGAGTCAGTTGG
AATGGAATCATGGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATTGAGATTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGTCTTCTTCAACACTCCACTTCAACTGCCAGCGTTCTGGGAACGGAATCATATCTCGATTTTATTATCCAAAAAACCTATGCTGCCACTGGCAGCTATCTTCT
TCTCGCCTGCAATAGTTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGCAGAGGATCTCGTTATCAAAGAAGCTCTCAAGATGTCAGATCACTATTTGAATTGTT
TGGGTTTGGGATATTTTTTGGATGGTCTACATTTTATCAAATGCTGCTGCTTTGTAGTTCATATCAAACATACTATTAAAGTAATTTCTATGGCTGTAGGAGTCAGTTGG
AATGGAATCATGGAAGAAGTTGACACTCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATTGAGATTGAATGA
Protein sequenceShow/hide protein sequence
MAGLLQHSTSTASVLGTESYLDFIIQKTYAATGSYLLLACNSSTNGICAFFFNPAEDLVIKEALKMSDHYLNCLGLGYFLDGLHFIKCCCFVVHIKHTIKVISMAVGVSW
NGIMEEVDTQGSVQEDGPTEIEIE