; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0009223 (gene) of Snake gourd v1 genome

Gene IDTan0009223
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG06:44313594..44314280
RNA-Seq ExpressionTan0009223
SyntenyTan0009223
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-4649.34Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL +EC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-4649.34Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL +EC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-4749.78Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY   K+ +NT+L++DDLRFVL +EC QV A N  QTV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-4749.78Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL KEC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-4649.34Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL +EC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.9e-4749.34Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL +EC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

A0A5A7TU93 Gag/pol protein4.9e-4749.34Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL +EC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

A0A5A7V4M1 Gag/pol protein1.7e-4749.78Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL KEC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

A0A5A7V6N0 Gag/pol protein2.2e-4749.78Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY   K+ +NT+L++DDLRFVL +EC QV A N  QTV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

A0A5D3CPJ6 Gag/pol protein4.9e-4749.34Show/hide
Query:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN
        M+S+ + +L +++L G NY + K+ +NT+L++DDLRFVL +EC QV A N  +TV++ Y+RW KA                                 + 
Subjt:  MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKA---------------------------------KN

Query:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR
        +FGQ S Q+ H++LKY+YN+RM EG S+REH+LN+MVHFNV EMN AVIDE SQVSFILESL +SFLQF SNAVMNKI Y     LN+L+T +S MK K 
Subjt:  IFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVEMNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYN----LNDLRTSQSFMKNKR

Query:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS
        Q  GEAN+   +RKF + S+S TKS  SS
Subjt:  QVDGEANLFAHSRKFQKRSSSRTKSCSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCCTCAATTATAGCCTTACTCAAAAGTGAACGTTTAACTGGCGAAAACTATACTACGTCGAAGTCCAACCTGAATACGATTTTGGTGGTTGACGACCTTCGGTT
TGTACTGACTAAGGAGTGTCATCAGGTCTCGGCTCAAAACGTTCCTCAAACTGTTAAAGATGCGTATGACCGCTGGATCAAGGCCAAGAATATTTTTGGACAACCGTCTG
GACAACTTTGGCATGAATCTCTCAAGTACGTTTATAACTCCCGTATGAAGGAGGGAACATCGATGAGAGAACACATTCTCAATCTGATGGTCCACTTCAACGTGGTAGAA
ATGAACGACGCGGTCATAGACGAGCAAAGTCAGGTGTCGTTCATCCTAGAATCTCTTTCGAAGAGTTTCTTGCAATTCTGCAGTAATGCGGTGATGAACAAGATAGAGTA
CAACCTAAACGACCTACGGACTTCCCAGTCTTTTATGAAGAATAAGAGACAGGTTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAAGTTCCAGAAGCGTTCATCCT
CTAGAACAAAGTCCTGCAGCTCCTCTTTTGTGTTGGGATATGTGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATCCTCAATTATAGCCTTACTCAAAAGTGAACGTTTAACTGGCGAAAACTATACTACGTCGAAGTCCAACCTGAATACGATTTTGGTGGTTGACGACCTTCGGTT
TGTACTGACTAAGGAGTGTCATCAGGTCTCGGCTCAAAACGTTCCTCAAACTGTTAAAGATGCGTATGACCGCTGGATCAAGGCCAAGAATATTTTTGGACAACCGTCTG
GACAACTTTGGCATGAATCTCTCAAGTACGTTTATAACTCCCGTATGAAGGAGGGAACATCGATGAGAGAACACATTCTCAATCTGATGGTCCACTTCAACGTGGTAGAA
ATGAACGACGCGGTCATAGACGAGCAAAGTCAGGTGTCGTTCATCCTAGAATCTCTTTCGAAGAGTTTCTTGCAATTCTGCAGTAATGCGGTGATGAACAAGATAGAGTA
CAACCTAAACGACCTACGGACTTCCCAGTCTTTTATGAAGAATAAGAGACAGGTTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAAGTTCCAGAAGCGTTCATCCT
CTAGAACAAAGTCCTGCAGCTCCTCTTTTGTGTTGGGATATGTGCCCTAG
Protein sequenceShow/hide protein sequence
MSSSIIALLKSERLTGENYTTSKSNLNTILVVDDLRFVLTKECHQVSAQNVPQTVKDAYDRWIKAKNIFGQPSGQLWHESLKYVYNSRMKEGTSMREHILNLMVHFNVVE
MNDAVIDEQSQVSFILESLSKSFLQFCSNAVMNKIEYNLNDLRTSQSFMKNKRQVDGEANLFAHSRKFQKRSSSRTKSCSSSFVLGYVP