; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0009293 (gene) of Snake gourd v1 genome

Gene IDTan0009293
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationLG05:50352537..50353154
RNA-Seq ExpressionTan0009293
SyntenyTan0009293
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]3.7e-4351.52Show/hide
Query:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-
        S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+  A +    VT EGA ++  +++SI P     L++ W+T 
Subjt:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-

Query:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDE
                           +MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ GSPV  R+LISQVLLGLDE
Subjt:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDE

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]2.6e-3646.6Show/hide
Query:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGA-------SSSSESTTSINPLYKTWMT
        +T    F++P LNQ+LNQ+TTIKL+RGN+LLWK LALPIL+SYKL SHL G   C P  +          VE A       SSSS +  ++NP Y+ W+T
Subjt:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGA-------SSSSESTTSINPLYKTWMT

Query:  --------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLIS
                            +MG   AKDLW+A Q LFG+QSRA+ED+L Q FQ ++KGN+ M EYLR MK + +NLGQA S V + +++S
Subjt:  --------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLIS

TYJ96311.1 uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]2.5e-3949.74Show/hide
Query:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-
        S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+  A +    VT EGA ++  +++SI P     L++ W+T 
Subjt:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-

Query:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQ
                           +MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ GSPV  R+LISQ
Subjt:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]4.3e-4756.68Show/hide
Query:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGASSSSESTTSINPLYKTW---------------
        F+SPPLNQLLNQ+T+IK++RGNFLLW+NLALPILRSYKL  +L G K CPP  L    T  N  +EG S+SS+S+ ++NP Y+ W               
Subjt:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGASSSSESTTSINPLYKTW---------------

Query:  -----MTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE
             M VMG +T+++LW A+Q LFGVQSRAE DYL+Q FQQ+ KG+++M EYL++MK HADNL  AGS VS R L+SQVL GLDEE
Subjt:  -----MTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]2.9e-3549.24Show/hide
Query:  TTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTV---------------------EGASSSSEST--TSINPLYKT------
        TTIKL++ N+LLW+NLALPILRSY+LE HL G   CPP F   A  +   TV                     +G +++S S+    +NP Y++      
Subjt:  TTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTV---------------------EGASSSSEST--TSINPLYKT------

Query:  ----W----------MTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE
            W          M VMG    K LW AIQ LFG+QSRA EDYLRQ FQQ+ KG MKM EYLR+MK H+DNLG  GSPV TR+L+SQVLLGLDEE
Subjt:  ----W----------MTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE

TrEMBL top hitse value%identityAlignment
A0A5A7SIT7 Uncharacterized protein1.8e-4351.52Show/hide
Query:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-
        S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+  A +    VT EGA ++  +++SI P     L++ W+T 
Subjt:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-

Query:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDE
                           +MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ GSPV  R+LISQVLLGLDE
Subjt:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDE

A0A5A7VPY0 Uncharacterized protein1.3e-3646.6Show/hide
Query:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGA-------SSSSESTTSINPLYKTWMT
        +T    F++P LNQ+LNQ+TTIKL+RGN+LLWK LALPIL+SYKL SHL G   C P  +          VE A       SSSS +  ++NP Y+ W+T
Subjt:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGA-------SSSSESTTSINPLYKTWMT

Query:  --------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLIS
                            +MG   AKDLW+A Q LFG+QSRA+ED+L Q FQ ++KGN+ M EYLR MK + +NLGQA S V + +++S
Subjt:  --------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLIS

A0A5D3BCH9 Uncharacterized protein1.2e-3949.74Show/hide
Query:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-
        S  +  FS+PPLNQ+LNQ+ T+KL+R N+LLWK LALPIL+ YKLE HL G   CP  F+  A +    VT EGA ++  +++SI P     L++ W+T 
Subjt:  STGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEG-NVTVEGASSSSESTTSINP-----LYKTWMT-

Query:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQ
                           +MG    +DLWDA Q  FGVQSRAEED+LRQ  Q +RKGN KM EYL +MK + DNLGQ GSPV  R+LISQ
Subjt:  -------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQ

A0A6J1D5J0 uncharacterized protein LOC1110175012.8e-2860.83Show/hide
Query:  ASSSSESTTSINPLYKTWMT--------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQA
        +SSS  +  +INPLY++W+T                    VMG   A DLW AIQ LFGVQS+AEEDYLRQ FQQ+RKG++KM+++LR+MK HADNLGQA
Subjt:  ASSSSESTTSINPLYKTWMT--------------------VMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQA

Query:  GSPVSTRSLISQVLLGLDEE
        GSPV TRSLISQVLLGLDEE
Subjt:  GSPVSTRSLISQVLLGLDEE

A0A6J1DCW4 uncharacterized protein LOC1110195982.1e-4756.68Show/hide
Query:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGASSSSESTTSINPLYKTW---------------
        F+SPPLNQLLNQ+T+IK++RGNFLLW+NLALPILRSYKL  +L G K CPP  L    T  N  +EG S+SS+S+ ++NP Y+ W               
Subjt:  FSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGASSSSESTTSINPLYKTW---------------

Query:  -----MTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE
             M VMG +T+++LW A+Q LFGVQSRAE DYL+Q FQQ+ KG+++M EYL++MK HADNL  AGS VS R L+SQVL GLDEE
Subjt:  -----MTVMGCNTAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAGCAGTCCACCGCTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGA
AAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGTCTTGCCCTCCTATGTTTCTATATC
AAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTCTAGCTCAGAATCAACTACATCAATTAATCCTCTCTATAAAACATGGATGACAGTTATGGGGTGCAAC
ACGGCCAAAGACCTGTGGGATGCTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGCGTCAAAAATTTCAACAATCACGCAAAGGTAATATGAA
AATGTCTGAATATTTAAGGATTATGAAGTGCCATGCTGACAATCTAGGGCAAGCTGGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACG
AAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAGCAGTCCACCGCTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGA
AAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGTCTTGCCCTCCTATGTTTCTATATC
AAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTCTAGCTCAGAATCAACTACATCAATTAATCCTCTCTATAAAACATGGATGACAGTTATGGGGTGCAAC
ACGGCCAAAGACCTGTGGGATGCTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGCGTCAAAAATTTCAACAATCACGCAAAGGTAATATGAA
AATGTCTGAATATTTAAGGATTATGAAGTGCCATGCTGACAATCTAGGGCAAGCTGGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACG
AAGAATAA
Protein sequenceShow/hide protein sequence
MANALLNESSSFSTGAPHFSSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKSCPPMFLYQARTEGNVTVEGASSSSESTTSINPLYKTWMTVMGCN
TAKDLWDAIQLLFGVQSRAEEDYLRQKFQQSRKGNMKMSEYLRIMKCHADNLGQAGSPVSTRSLISQVLLGLDEE