; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0009324 (gene) of Snake gourd v1 genome

Gene IDTan0009324
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG05:5457987..5458469
RNA-Seq ExpressionTan0009324
SyntenyTan0009324
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.0e-1340Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W PP    +K+N DAA K  +  +GL I+IRDS    +L+A  +  +   V  AE +A +EG+ LA E G+ P  IETDS  ++NLL  + EDESE GVL
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFI-SAYSFTRRSEN
          +++       I   +SF  R  N
Subjt:  MKNVKDSYLRYFI-SAYSFTRRSEN
XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.0e-1744Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLG-IVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGV
        W P  E ++KL TDA+      ++GLG I+IRD +G+ + +A+ Y  +  SVD AE +A  EGL++A E GI PIL+ETDSL IYNL +++ E  S+TG 
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLG-IVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGV

Query:  LMKNVKDSYLRYFISAYSFTRRSEN
        +++ VK         +YSFT+R+ N
Subjt:  LMKNVKDSYLRYFISAYSFTRRSEN
XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.8e-2041.94Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W PP + IYK+NTDA+       +GLGI+IR+ +G+ M +A+ Y  N  SVD AE +   EGLQLA ++G+ P+++ETDS  I+NL S+  ED SETG +
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFISAYSFTRRSEN
        +   K+ + +   ++++F +R  N
Subjt:  MKNVKDSYLRYFISAYSFTRRSEN
XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.2e-1337.9Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W+PP E IYK+NTDA+       +GLGI+I + +G+ M  A+ Y  N  SVD AE +A  EGLQLA E+G+ P L                ED SETG +
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFISAYSFTRRSEN
        +   K+ + +   ++++F +R  N
Subjt:  MKNVKDSYLRYFISAYSFTRRSEN
XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]3.4e-1643.08Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W+PPA  + K+N DAA + +S  +G+G++IRDS G   LTA      A  VD+ EG A+ EG+ LA E G     IETDSL I+NLL+ +  D+SE GVL
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFIS------AYSFTRRSEN
              S ++ F+S      ++SFT R+ N
Subjt:  MKNVKDSYLRYFIS------AYSFTRRSEN
TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077759.9e-1440Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W PP    +K+N DAA K  +  +GL I+IRDS    +L+A  +  +   V  AE +A +EG+ LA E G+ P  IETDS  ++NLL  + EDESE GVL
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFI-SAYSFTRRSEN
          +++       I   +SF  R  N
Subjt:  MKNVKDSYLRYFI-SAYSFTRRSEN
A0A6J1CDQ4 uncharacterized protein LOC1110105335.1e-1844Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLG-IVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGV
        W P  E ++KL TDA+      ++GLG I+IRD +G+ + +A+ Y  +  SVD AE +A  EGL++A E GI PIL+ETDSL IYNL +++ E  S+TG 
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLG-IVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGV

Query:  LMKNVKDSYLRYFISAYSFTRRSEN
        +++ VK         +YSFT+R+ N
Subjt:  LMKNVKDSYLRYFISAYSFTRRSEN
A0A6J1CIF1 uncharacterized protein LOC1110112371.9e-2041.94Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W PP + IYK+NTDA+       +GLGI+IR+ +G+ M +A+ Y  N  SVD AE +   EGLQLA ++G+ P+++ETDS  I+NL S+  ED SETG +
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFISAYSFTRRSEN
        +   K+ + +   ++++F +R  N
Subjt:  MKNVKDSYLRYFISAYSFTRRSEN
A0A6J1DAR4 uncharacterized protein LOC1110189545.8e-1437.9Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W+PP E IYK+NTDA+       +GLGI+I + +G+ M  A+ Y  N  SVD AE +A  EGLQLA E+G+ P L                ED SETG +
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFISAYSFTRRSEN
        +   K+ + +   ++++F +R  N
Subjt:  MKNVKDSYLRYFISAYSFTRRSEN
A0A6J1DBJ7 uncharacterized protein LOC1110189731.6e-1643.08Show/hide
Query:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL
        W+PPA  + K+N DAA + +S  +G+G++IRDS G   LTA      A  VD+ EG A+ EG+ LA E G     IETDSL I+NLL+ +  D+SE GVL
Subjt:  WKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKEVEDESETGVL

Query:  MKNVKDSYLRYFIS------AYSFTRRSEN
              S ++ F+S      ++SFT R+ N
Subjt:  MKNVKDSYLRYFIS------AYSFTRRSEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.7e-0526.32Show/hide
Query:  HFSDKWKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKE
        + S +WK P     K NTDA  + ++P  G+G ++R+  G  +   +   P   +V  AE  A++  +          I+ E+D+  + NLL+ +
Subjt:  HFSDKWKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKE
AT4G29090.1 Ribonuclease H-like superfamily protein9.2e-0426.37Show/hide
Query:  KWKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKE
        +W+PP     K NTDA     +   G+G V+R+ KG+     +   P   SV  AE  A++  +          ++ E+DS ++  +L+ +
Subjt:  KWKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPILIETDSLLIYNLLSKE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCCAGGCACTGTCGCAAAGAATTACTTGGGGGCTTTTAGAGAGGCAAATCATCAATGTAAGGTTATTGGTAATCAAAGTAATTCTACATTTTTCAGACAAATG
GAAACCACCCGCAGAGAACATTTACAAATTAAATACAGATGCAGCTCTTAAATTTCAATCTCCCGATTCTGGTTTGGGGATTGTGATCAGAGATAGTAAAGGGAAAGATA
TGCTTACTGCCTCTATATATGCACCAAATGCTTTTTCGGTTGATTTTGCAGAAGGAGTAGCAATAAAGGAAGGTCTTCAGCTGGCTCGCGAAATGGGTATCTGGCCGATT
TTGATTGAGACAGACTCGTTACTTATCTACAATTTGCTGAGTAAAGAGGTTGAAGATGAGTCAGAAACTGGAGTCTTGATGAAAAATGTCAAAGACTCCTATTTAAGATA
TTTTATTTCGGCTTACAGTTTCACCCGGCGATCCGAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATCCAGGCACTGTCGCAAAGAATTACTTGGGGGCTTTTAGAGAGGCAAATCATCAATGTAAGGTTATTGGTAATCAAAGTAATTCTACATTTTTCAGACAAATG
GAAACCACCCGCAGAGAACATTTACAAATTAAATACAGATGCAGCTCTTAAATTTCAATCTCCCGATTCTGGTTTGGGGATTGTGATCAGAGATAGTAAAGGGAAAGATA
TGCTTACTGCCTCTATATATGCACCAAATGCTTTTTCGGTTGATTTTGCAGAAGGAGTAGCAATAAAGGAAGGTCTTCAGCTGGCTCGCGAAATGGGTATCTGGCCGATT
TTGATTGAGACAGACTCGTTACTTATCTACAATTTGCTGAGTAAAGAGGTTGAAGATGAGTCAGAAACTGGAGTCTTGATGAAAAATGTCAAAGACTCCTATTTAAGATA
TTTTATTTCGGCTTACAGTTTCACCCGGCGATCCGAGAATTGA
Protein sequenceShow/hide protein sequence
MKIQALSQRITWGLLERQIINVRLLVIKVILHFSDKWKPPAENIYKLNTDAALKFQSPDSGLGIVIRDSKGKDMLTASIYAPNAFSVDFAEGVAIKEGLQLAREMGIWPI
LIETDSLLIYNLLSKEVEDESETGVLMKNVKDSYLRYFISAYSFTRRSEN